View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2675_low_24 (Length: 285)
Name: NF2675_low_24
Description: NF2675
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2675_low_24 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 267; Significance: 1e-149; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 1 - 275
Target Start/End: Complemental strand, 7131973 - 7131699
Alignment:
| Q |
1 |
ctctctggaataaacatctcagcatcagtccaatattgaggatcccttgccatagcccatacattaatcatgactttagtcttttttggtatatcataac |
100 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7131973 |
ctctctggattaaacatctcagcatcagtccaatattgaggatcccttgccatagcccatacattaatcatgactttagtcttttttggtatatcataac |
7131874 |
T |
|
| Q |
101 |
catcaatgttggttaattcagtgcattctctagggagtaataaaggagtaggtgagtgtaaccttaaggtctcttttatcactaattttaggtatggaag |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7131873 |
catcaatgttggttaattcagtgcattctctagggagtaataaaggagtaggtgagtgtaaccttaaggtctcttttatcactaattttaggtatggaag |
7131774 |
T |
|
| Q |
201 |
ttcttgaatatcattttcagatataatttcttttcctttgcatgcttctcttatttcagcttgtgctttgttcat |
275 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
7131773 |
ttcttgaatatcattttcagatataatttcttttcctttgcatgcttctcttatttcagcttgtgccttgttcat |
7131699 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 109; E-Value: 7e-55
Query Start/End: Original strand, 1 - 269
Target Start/End: Complemental strand, 7154467 - 7154199
Alignment:
| Q |
1 |
ctctctggaataaacatctcagcatcagtccaatattgaggatcccttgccatagcccatacattaatcatgactttagtcttttttggtatatcataac |
100 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||| ||||| ||||||| |||||| |||| ||||| |||||||| ||||||||||| ||||||| |
|
|
| T |
7154467 |
ctctctggaatgaacatctcagcatcagtccaatattgtggatctcttgccactgcccatgcatttatcatcactttagtattttttggtatttcataac |
7154368 |
T |
|
| Q |
101 |
catcaatgttggttaattcagtgcattctctagggagtaataaaggagtaggtgagtgtaaccttaaggtctcttttatcactaattttaggtatggaag |
200 |
Q |
| |
|
|||| ||| |||| |||||||||||||||||||||| |||||||| | ||||| ||||||||| | || ||||| |||||||| || | ||| | || |
|
|
| T |
7154367 |
catctatgatggtcaattcagtgcattctctagggaccaataaaggtgaaggtgggtgtaacctcattgtttctttgatcactaacttaaagtaagttag |
7154268 |
T |
|
| Q |
201 |
ttcttgaatatcattttcagatataatttcttttcctttgcatgcttctcttatttcagcttgtgcttt |
269 |
Q |
| |
|
||| | | |||| ||||||||| |||| ||||||||| |||||||||||| ||||||||||||||| |
|
|
| T |
7154267 |
ttcatttagatcagattcagatattattttctttcctttgaatgcttctcttagttcagcttgtgcttt |
7154199 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 1 - 190
Target Start/End: Complemental strand, 7141697 - 7141508
Alignment:
| Q |
1 |
ctctctggaataaacatctcagcatcagtccaatattgaggatcccttgccatagcccatacattaatcatgactttagtcttttttggtatatcataac |
100 |
Q |
| |
|
||||||||||||||| ||||||||||| ||||||||| |||||| ||| | || ||||| |||| || | |||| |||| ||||||||||||||||| | |
|
|
| T |
7141697 |
ctctctggaataaacctctcagcatcattccaatatttaggatctcttcctattgcccacgcatttataaagactgtagtattttttggtatatcatacc |
7141598 |
T |
|
| Q |
101 |
catcaatgttggttaattcagtgcattctctagggagtaataaaggagtaggtgagtgtaaccttaaggtctcttttatcactaatttta |
190 |
Q |
| |
|
|||| || ||||||| ||| |||| ||| || | || ||||||| ||||| ||||||||| || || ||||| |||||||| |||| |
|
|
| T |
7141597 |
catctattttggttagttctgtgctcaatcttggaaccaacaaaggagaaggtgggtgtaacctcaatgtttctttgatcactaacttta |
7141508 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University