View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2675_low_27 (Length: 276)
Name: NF2675_low_27
Description: NF2675
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2675_low_27 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 212; Significance: 1e-116; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 18 - 276
Target Start/End: Original strand, 36061571 - 36061838
Alignment:
| Q |
18 |
aagacatacatgattaaaaagcttat---------catatgatagtactaagtagggttttgtgcaaagattttttacaatgccaaataatcataatcgt |
108 |
Q |
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| T |
36061571 |
aagacatacatgattaaaaagcttatgatatgaatcatatgatagtactaagtagggttttgtgcaaagattttttacaatgccaaataatcataatcgt |
36061670 |
T |
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| Q |
109 |
cacatcgttaaaaaccgatcacttaactagtaattctatatatgattagttgtgatttggtgacagtatacacttatttatatcgatggtatatcaaact |
208 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||| |
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| T |
36061671 |
cacatcgttaaaaaccgatcacttaactagtaattctatatatgattagttgtgatttggtgacggtatacacttatttatatcgacggtatatcaaact |
36061770 |
T |
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| Q |
209 |
taaactctagaaaagaaatccacaattatgaatctacgaccgtgttatgtaagcccaaactcactttt |
276 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||| ||||| |||||||||||| |||| |
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| T |
36061771 |
taaactctagaaaagaaatccacaattatgagtctacgaccgtgatatgtgagcccaaactcaatttt |
36061838 |
T |
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