View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2675_low_29 (Length: 263)

Name: NF2675_low_29
Description: NF2675
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2675_low_29
NF2675_low_29
[»] chr1 (3 HSPs)
chr1 (16-248)||(21056568-21056798)
chr1 (131-248)||(8256646-8256759)
chr1 (132-179)||(21056273-21056320)
[»] chr3 (9 HSPs)
chr3 (56-248)||(53521170-53521359)
chr3 (56-248)||(36006003-36006192)
chr3 (59-147)||(9372667-9372754)
chr3 (132-248)||(9372991-9373106)
chr3 (132-248)||(9373630-9373746)
chr3 (132-248)||(53521597-53521710)
chr3 (142-179)||(9373383-9373420)
chr3 (196-248)||(9373317-9373369)
chr3 (20-53)||(36005952-36005985)
[»] chr4 (6 HSPs)
chr4 (56-248)||(26602845-26603031)
chr4 (56-248)||(8120863-8121050)
chr4 (132-248)||(26602517-26602631)
chr4 (196-248)||(8120577-8120629)
chr4 (132-248)||(26603267-26603378)
chr4 (20-53)||(26603049-26603082)
[»] chr5 (3 HSPs)
chr5 (56-248)||(38936419-38936599)
chr5 (196-248)||(38937217-38937269)
chr5 (132-179)||(38937284-38937332)


Alignment Details
Target: chr1 (Bit Score: 158; Significance: 4e-84; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 158; E-Value: 4e-84
Query Start/End: Original strand, 16 - 248
Target Start/End: Original strand, 21056568 - 21056798
Alignment:
Q  16 atgcgctatttttattgaaaagcactgaacagatcgtttgtttgatgaaacatatgggcccttattcttttttattttgaatattcaagcacctatttta 115  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||    
T  21056568 atgcgctatttttattgaaaagcactgaacagatcgtttgtttgatgaaacatatgg-cccttattctttttcattttgaatattcaagcacctatttta 21056666  T
Q  116 gaacttaaaaacagaattataagattagtcctaatctctcctattttttctacttatgaaaatgtcnnnnnnnnnnnnnngaaaggactaaacataactt 215  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||              ||||||||||||||||||||    
T  21056667 gaacttaaaaacagaattataagattagtcctaatctctcctattttttctacatataaaaatgtc-ttttttttttttggaaaggactaaacataactt 21056765  T
Q  216 aaataagacatgcgtttccttctgatgtttttt 248  Q
    ||||||||| ||| |||||||||||||||||||    
T  21056766 aaataagacctgcatttccttctgatgtttttt 21056798  T

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Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 131 - 248
Target Start/End: Original strand, 8256646 - 8256759
Alignment:
Q  131 attataagattagtcctaatctctcctattttttctacttatgaaaatgtcnnnnnnnnnnnnnngaaaggactaaacataacttaaataagacatgcgt 230  Q
    |||||| |||||||||| |||||||||||||||||||||||||||||||                |||||||| ||||| |||||||||||||| |||||    
T  8256646 attataggattagtcctcatctctcctattttttctacttatgaaaatg----attttttttttggaaaggacaaaacaaaacttaaataagacctgcgt 8256741  T
Q  231 ttccttctgatgtttttt 248  Q
    |||||||||||| |||||    
T  8256742 ttccttctgatggttttt 8256759  T

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Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 132 - 179
Target Start/End: Original strand, 21056273 - 21056320
Alignment:
Q  132 ttataagattagtcctaatctctcctattttttctacttatgaaaatg 179  Q
    ||||| |||||||||| |||||||||||||||||||||||||||||||    
T  21056273 ttataggattagtcctcatctctcctattttttctacttatgaaaatg 21056320  T

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Target: chr3 (Bit Score: 118; Significance: 3e-60; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 56 - 248
Target Start/End: Complemental strand, 53521359 - 53521170
Alignment:
Q  56 tttgatgaaacatatgggcccttattcttttttattttgaatattcaagcacctattttagaacttaaaaacagaattataagattagtcctaatctctc 155  Q
    ||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  53521359 tttgatgaaacatatgg-cccttattctttttcattttgaatattcaagcacctattttagaacttaaaaacagaattataagattagtcctaatctctc 53521261  T
Q  156 ctattttttctacttatgaaaatgtcnnnnnnnnnnnnnngaaaggactaaacataacttaaataagacatgcgtttccttctgatgtttttt 248  Q
     |||||||||||||||||||||||||              |||||||||||||| |||||||||||||| || ||||||||||||||||||||    
T  53521260 atattttttctacttatgaaaatgtc--attttttttttggaaaggactaaacagaacttaaataagacctgtgtttccttctgatgtttttt 53521170  T

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Target: chr3; HSP #2
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 56 - 248
Target Start/End: Original strand, 36006003 - 36006192
Alignment:
Q  56 tttgatgaaacatatgggcccttattcttttttattttgaatattcaagcacctattttagaacttaaaaacagaattataagattagtcctaatctctc 155  Q
    ||||||||||||||||  |||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  36006003 tttgatgaaacatatga-cccttattctttttcattttgaatattcaagcacctattttagaacttaaaaacaaaattataagattagtcctaatctctc 36006101  T
Q  156 ctattttttctacttatgaaaatgtcnnnnnnnnnnnnnngaaaggactaaacataacttaaataagacatgcgtttccttctgatgtttttt 248  Q
    |||||||||||||||||||||||||               |||||||||||||| |||||||||||||||||| ||||||| |||||||||||    
T  36006102 ctattttttctacttatgaaaatgt--aattttttttttggaaaggactaaacagaacttaaataagacatgcatttccttatgatgtttttt 36006192  T

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Target: chr3; HSP #3
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 59 - 147
Target Start/End: Complemental strand, 9372754 - 9372667
Alignment:
Q  59 gatgaaacatatgggcccttattcttttttattttgaatattcaagcacctattttagaacttaaaaacagaattataagattagtcct 147  Q
    |||||||||| ||| |||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9372754 gatgaaacatgtgg-cccttattctttttgatattgaatattcaagcacctattttagaacttaaaaacagaattataagattagtcct 9372667  T

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Target: chr3; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 132 - 248
Target Start/End: Complemental strand, 9373106 - 9372991
Alignment:
Q  132 ttataagattagtcctaatctctcctattttttctacttatgaaaatgtcnnnnnnnnnnnnnngaaaggactaaacataacttaaataagacatgcgtt 231  Q
    ||||| || ||||||||||||||||||||||||||||||||||||||| |              |||||||||||||| |||||||||||||| ||||||    
T  9373106 ttataggactagtcctaatctctcctattttttctacttatgaaaatgacttctttttttttt-gaaaggactaaacaaaacttaaataagacttgcgtt 9373008  T
Q  232 tccttctgatgtttttt 248  Q
    |||||||||||||||||    
T  9373007 tccttctgatgtttttt 9372991  T

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Target: chr3; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 132 - 248
Target Start/End: Complemental strand, 9373746 - 9373630
Alignment:
Q  132 ttataagattagtcctaatctctcctattttttctacttatgaaaatgtcnnnnnnnnnnnnnngaaaggactaaacataacttaaataagacatgcgtt 231  Q
    ||||| ||| ||||||||||||||||||||||||||||||||||||||                 ||||||||||||| ||| ||||||||||||| |||    
T  9373746 ttataggatcagtcctaatctctcctattttttctacttatgaaaatgattttttattttttggaaaaggactaaacagaacataaataagacatgtgtt 9373647  T
Q  232 tccttctgatgtttttt 248  Q
    |||||||||||||||||    
T  9373646 tccttctgatgtttttt 9373630  T

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Target: chr3; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 132 - 248
Target Start/End: Complemental strand, 53521710 - 53521597
Alignment:
Q  132 ttataagattagtcctaatctctcctattttttctacttatgaaaatgtcnnnnnnnnnnnnnngaaaggactaaacataacttaaataagacatgcgtt 231  Q
    ||||| |||||||||| ||||||| ||||||||||||||||||||||| |              |||||||||||||| |||||||||||||| ||| ||    
T  53521710 ttataggattagtcctcatctctcatattttttctacttatgaaaatgacttttttttttg---gaaaggactaaacagaacttaaataagacctgcatt 53521614  T
Q  232 tccttctgatgtttttt 248  Q
    ||||||| |||||||||    
T  53521613 tccttcttatgtttttt 53521597  T

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Target: chr3; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 142 - 179
Target Start/End: Complemental strand, 9373420 - 9373383
Alignment:
Q  142 agtcctaatctctcctattttttctacttatgaaaatg 179  Q
    |||||||||||||||||||||||||| |||||||||||    
T  9373420 agtcctaatctctcctattttttctaattatgaaaatg 9373383  T

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Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 196 - 248
Target Start/End: Complemental strand, 9373369 - 9373317
Alignment:
Q  196 gaaaggactaaacataacttaaataagacatgcgtttccttctgatgtttttt 248  Q
    |||||||||||||||||| ||||||| || || ||||||||||||| ||||||    
T  9373369 gaaaggactaaacataacataaataaaacctgtgtttccttctgatatttttt 9373317  T

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Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 20 - 53
Target Start/End: Original strand, 36005952 - 36005985
Alignment:
Q  20 gctatttttattgaaaagcactgaacagatcgtt 53  Q
    |||||||||||||||||||| |||||||||||||    
T  36005952 gctatttttattgaaaagcattgaacagatcgtt 36005985  T

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Target: chr4 (Bit Score: 115; Significance: 2e-58; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 56 - 248
Target Start/End: Complemental strand, 26603031 - 26602845
Alignment:
Q  56 tttgatgaaacatatgggcccttattcttttttattttgaatattcaagcacctattttagaacttaaaaacagaattataagattagtcctaatctctc 155  Q
    ||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||    
T  26603031 tttgatgaaacatatgg-cccttattctttttcattttgaatattcaagcacctattttataacttaaaaatagaattataagattagtcctaatctctc 26602933  T
Q  156 ctattttttctacttatgaaaatgtcnnnnnnnnnnnnnngaaaggactaaacataacttaaataagacatgcgtttccttctgatgtttttt 248  Q
    ||||||||||||||||||||||||||               |||||| |||||| ||||||||||||||||||||||||||||||||||||||    
T  26602932 ctattttttctacttatgaaaatgtcattcttttta-----aaaggattaaacagaacttaaataagacatgcgtttccttctgatgtttttt 26602845  T

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Target: chr4; HSP #2
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 56 - 248
Target Start/End: Original strand, 8120863 - 8121050
Alignment:
Q  56 tttgatgaaacatatgggcccttattcttttttattttgaatattcaagcacctattttagaacttaaaaacagaattataagattagtcctaatctctc 155  Q
    ||||||||||||||||| |||||||||||||| ||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||| ||    
T  8120863 tttgatgaaacatatgg-cccttattctttttcattttgaatatacaagcacctattttagaacttaaaaacataattataagattagtcctaatctttc 8120961  T
Q  156 ctattttttctacttatgaaaatgtcnnnnnnnnnnnnnngaaaggactaaacataacttaaataagacatgcgtttccttctgatgtttttt 248  Q
    ||||||||||||||||||||||||||              |||||||||||||| |||||||||||||| || ||||||||||||||||||||    
T  8120962 ctattttttctacttatgaaaatgtc----attttttttggaaaggactaaacagaacttaaataagacttgtgtttccttctgatgtttttt 8121050  T

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Target: chr4; HSP #3
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 132 - 248
Target Start/End: Complemental strand, 26602631 - 26602517
Alignment:
Q  132 ttataagattagtcctaatctctcctattttttctacttatgaaaatgtcnnnnnnnnnnnnnngaaaggactaaacataacttaaataagacatgcgtt 231  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||| |              |||||||||||||| |||||||||||||| ||||||    
T  26602631 ttataggattagtcctaatctctcctattttttctacttatgaaaatgactttttttttttg--gaaaggactaaacagaacttaaataagacttgcgtt 26602534  T
Q  232 tccttctgatgtttttt 248  Q
    |||||||||||||||||    
T  26602533 tccttctgatgtttttt 26602517  T

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Target: chr4; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 196 - 248
Target Start/End: Original strand, 8120577 - 8120629
Alignment:
Q  196 gaaaggactaaacataacttaaataagacatgcgtttccttctgatgtttttt 248  Q
    |||||||||||||| |||||||||||||||||||||||||||| |||||||||    
T  8120577 gaaaggactaaacagaacttaaataagacatgcgtttccttcttatgtttttt 8120629  T

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Target: chr4; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 132 - 248
Target Start/End: Complemental strand, 26603378 - 26603267
Alignment:
Q  132 ttataagattagtcctaatctctcctattttttctacttatgaaaatgtcnnnnnnnnnnnnnngaaaggactaaacataacttaaataagacatgcgtt 231  Q
    ||||| |||||||||| ||||||||||||||||||||||||||||||| |               ||||||||||||| ||||||||||||||||| |||    
T  26603378 ttataggattagtcctcatctctcctattttttctacttatgaaaatgactttttttttt-----aaaggactaaacagaacttaaataagacatgagtt 26603284  T
Q  232 tccttctgatgtttttt 248  Q
    ||||||| |||||||||    
T  26603283 tccttcttatgtttttt 26603267  T

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Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 20 - 53
Target Start/End: Complemental strand, 26603082 - 26603049
Alignment:
Q  20 gctatttttattgaaaagcactgaacagatcgtt 53  Q
    |||||||||||||||||||||| |||||||||||    
T  26603082 gctatttttattgaaaagcactaaacagatcgtt 26603049  T

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Target: chr5 (Bit Score: 94; Significance: 6e-46; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 56 - 248
Target Start/End: Complemental strand, 38936599 - 38936419
Alignment:
Q  56 tttgatgaaacatatgggcccttattcttttttattttgaatattcaagcacctattttagaacttaaaaacagaattataagattagtcctaatctctc 155  Q
    ||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38936599 tttgatgaaacatatgg-cccttattctttttcattttgaatattcaagcacctattttagaacttaaaaacagaattataagattagtcctaatctctc 38936501  T
Q  156 ctattttttctacttatgaaaatgtcnnnnnnnnnnnnnngaaaggactaaacataacttaaataagacatgcgtttccttctgatgtttttt 248  Q
             |||||||||||||||||              ||||||| |||||| ||||||||||||||||||||||||||||||||||||||    
T  38936500 ---------ctacttatgaaaatgtc--atttttttttttgaaaggattaaacagaacttaaataagacatgcgtttccttctgatgtttttt 38936419  T

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Target: chr5; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 196 - 248
Target Start/End: Complemental strand, 38937269 - 38937217
Alignment:
Q  196 gaaaggactaaacataacttaaataagacatgcgtttccttctgatgtttttt 248  Q
    ||||||||||||||||||||||||||||| ||||||||||||| |||||||||    
T  38937269 gaaaggactaaacataacttaaataagacctgcgtttccttcttatgtttttt 38937217  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 132 - 179
Target Start/End: Complemental strand, 38937332 - 38937284
Alignment:
Q  132 ttataagattagtcctaatctctcctatttttt-ctacttatgaaaatg 179  Q
    ||||| || ||||||| |||||||||||||||| |||||||||||||||    
T  38937332 ttataggactagtcctcatctctcctatttttttctacttatgaaaatg 38937284  T

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