View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2675_low_33 (Length: 250)
Name: NF2675_low_33
Description: NF2675
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2675_low_33 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 186; Significance: 1e-101; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 9 - 250
Target Start/End: Original strand, 5439568 - 5439809
Alignment:
| Q |
9 |
gagatgaaataatgtgatgaatttgcttcttaaattttaggtaaataaataaaggattatacaaatcatttnnnnnnnntgttcttggtggatatccata |
108 |
Q |
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| T |
5439568 |
gagatgaaataatgtgatgaattcgcttcttaaattttaggtaaataaataaaggattatacaaatcatttaaaaaaaatgttctcggtggatatccata |
5439667 |
T |
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| Q |
109 |
aatacctagaagtacttgaaatttgtgaaatacttgttgtttatacctaaaaataagtatcatattagccaacatcaataaatagatgattgaactttag |
208 |
Q |
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| T |
5439668 |
aatacctacaagtacttgaaatttgtggaatacttgttgtttatacttaaaaataattatcatattagccaacatcaataaatagatgattgaactttag |
5439767 |
T |
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| Q |
209 |
gtaaggaaacttcccggtcaatgaaaggttagacaatttctc |
250 |
Q |
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| T |
5439768 |
gcaaggaaacttcccggtcaatgaaaggttaggcaatttctc |
5439809 |
T |
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Target: chr6 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 166 - 218
Target Start/End: Complemental strand, 35066725 - 35066673
Alignment:
| Q |
166 |
tatcatattagccaacatcaataaatagatgattgaactttaggtaaggaaac |
218 |
Q |
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| T |
35066725 |
tatcatgttagccaacatcgacaaatagacaattgaactttaggtgaggaaac |
35066673 |
T |
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