View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2675_low_4 (Length: 599)
Name: NF2675_low_4
Description: NF2675
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2675_low_4 |
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Alignment Details
Target: chr4 (Bit Score: 567; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 567; E-Value: 0
Query Start/End: Original strand, 1 - 583
Target Start/End: Original strand, 226811 - 227393
Alignment:
| Q |
1 |
aattacatattatttccctgttcaatgagaagattccttgtgggctataggtctccaatctaatttttcctctccttatggccaattcaaaaacgccggc |
100 |
Q |
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| T |
226811 |
aattacatattatttccctgttcaatgagaagattccttgtgggctataggcctccaatctaatttttcctctccttatggccaattcaaaaacgccggc |
226910 |
T |
|
| Q |
101 |
tcagtgaatgttactgttatattgcagacaggcagttcaagtcataaactacttatcaatgctcattagtaaagttattgggctcttgtaaacacaaata |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
226911 |
tcagtgaatgttactgttatattgcagacaggcagttcaagtcataaactacttatcaatgctcattagtaaagttattgggctcttgtaaacacaaata |
227010 |
T |
|
| Q |
201 |
cgcctcctcctccaccaacagcacgacctaaaagcatattatcatccaaatagcactggaaatatagtgctccaactgattctctacaatacaaaagagc |
300 |
Q |
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| T |
227011 |
cgcctcctcctccaccaacagcacgacctaaaagcatattatcatccaaataacactggaaatatagtgctccaactgattccctacaatacaaaagagc |
227110 |
T |
|
| Q |
301 |
gccatgtgccaaaatttccaacgaagagactaactatttaaacagagtggcccatcgcatatatatgtataccttcctggatccctcacaggaatctgag |
400 |
Q |
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| T |
227111 |
gccatgtgccaaaatttccaacgaagagactaactatttaaacagagtggcccatcgcatatatatgtataccttcctggatccctcacaggaatctgag |
227210 |
T |
|
| Q |
401 |
ctttgaaagcacggagatattgttgtaagatctgcaggggaaaaacacactgtataagttaaccattatgtctaatacatatctggtctgcaatggtcct |
500 |
Q |
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| T |
227211 |
ctttgaaagcacagagatattgttgtaagatctgcaggggaaaaacacactgtataagttaaccattatgtctaatacatatctggtctgcaatggtcct |
227310 |
T |
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| Q |
501 |
catgcaaacacactatcatcaggccattcacataaaatatatcaccgaagttttgattagaagcagaaatggtatctaggtat |
583 |
Q |
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| T |
227311 |
catgcaaacacactatcatcaggccattcacataaaatatatcaccgaagttttgattagaagcagaaatggtatctaggtat |
227393 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 145; E-Value: 5e-76
Query Start/End: Original strand, 33 - 569
Target Start/End: Original strand, 236486 - 237005
Alignment:
| Q |
33 |
attccttgtgggctataggtctccaatctaatttttcctctccttatggccaattcaaaaacgccggctcagtgaatgttactgttatattgcagacagg |
132 |
Q |
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||||||||||| ||| ||| |||||||||| || ||||||||| |||||||||||| |||| |||| | || |||||||||||| ||| | || |
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| T |
236486 |
attccttgtggactacaggcctccaatctatttcttcctctccatatggccaattcctcaacgatggcttatcgagtgttactgttat--tgctgtcaaa |
236583 |
T |
|
| Q |
133 |
cagttcaagtcataaactacttatcaatgctcattagtaaagttattgggctcttgtaaacacaaatacgcctcctcctccaccaacagcacgacctaaa |
232 |
Q |
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|||| ||||| ||||||||| |||||||||| | |||||||| |||||||||| |||||||||||||| ||||||||||||||||||||| || ||| |
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| T |
236584 |
cagtaaaagtcttaaactactgatcaatgctcgtcagtaaagtgattgggctctcgtaaacacaaatac---tcctcctccaccaacagcacggcccaaa |
236680 |
T |
|
| Q |
233 |
agcatattatcatccaaatagcactggaaatatagtgctccaactgattctctacaatacaaaagagcgccatgtgccaaaatttccaacgaagagacta |
332 |
Q |
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| T |
236681 |
agcatattatcatccaaataactcagataatataatcctcctactgattccctacaatccaaaagagcattatactcataattttccaataaagacacta |
236780 |
T |
|
| Q |
333 |
actatttaaacagagtggcccatcgcatatatatgtataccttcctggatccctcacaggaatctgagctttgaaagcacggagatattgttgtaagatc |
432 |
Q |
| |
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| || ||||||| |||| |||||| |||| |||||||||| |||| |||||| |||| |||||||||||||||||||||||||| || ||| |
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| T |
236781 |
attaattaaacaaagtgacccatc------atatatataccttcccggattcctcacgggaaattgagctttgaaagcacggagatattgc---aatatc |
236871 |
T |
|
| Q |
433 |
tgcaggggaaaaacacactgtataagttaaccattatgtctaatacatatctggtctgcaatggtcctcatgcaaacacactatcatcaggccattcaca |
532 |
Q |
| |
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|||| | |||||||||||||||||||||||| |||||||| || ||||||| ||||||| || |||||||||| | | |||| ||| ||||||||||| |
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| T |
236872 |
tgcaagagaaaaacacactgtataagttaacaattatgtcgtatgcatatcttgtctgcattgatcctcatgcagatatactaccattaggccattcac- |
236970 |
T |
|
| Q |
533 |
taaaatatatcaccgaagttttgattagaagcagaaa |
569 |
Q |
| |
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|||||||||||||||||||||||| || ||||||| |
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| T |
236971 |
--aaatatatcaccgaagttttgatttgatgcagaaa |
237005 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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