View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2675_low_40 (Length: 237)
Name: NF2675_low_40
Description: NF2675
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2675_low_40 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 205; Significance: 1e-112; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 7132120 - 7132343
Alignment:
| Q |
1 |
aacttcctaataagatcaaacctatggatttggatatgactgaacattatggactggctattggaaagaaaagtgatttgtgtttgattcccactgttta |
100 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7132120 |
aacttcctaataagatgaaacctatggatttggatatgactgaacattatggattggctattggaaagaaaagtgatttgtgtttgattcccactgttta |
7132219 |
T |
|
| Q |
101 |
tgcctgatgtataattatatgatcatataattaaattttagtgtctatgttttatattttaagttgtactttagagagt--tgtgtcttttaatttttga |
198 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
7132220 |
tgcctgatgtataattatatgatcatataattaaattttagtgtctatgttttatattttaagttgtactttagagagttatgtgtcttttaatttttga |
7132319 |
T |
|
| Q |
199 |
aataaaagtcaaacctgaattgtt |
222 |
Q |
| |
|
|||||||||||||||||||||||| |
|
|
| T |
7132320 |
aataaaagtcaaacctgaattgtt |
7132343 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 13 - 102
Target Start/End: Original strand, 7154626 - 7154715
Alignment:
| Q |
13 |
agatcaaacctatggatttggatatgactgaacattatggactggctattggaaagaaaagtgatttgtgtttgattcccactgtttatg |
102 |
Q |
| |
|
|||| |||||| ||||||||||||||||||| || |||| |||| |||||| | ||| ||| |||||||||||||| | |||||||| |
|
|
| T |
7154626 |
agatgaaacctgaggatttggatatgactgaaaatgttggattggcagttggaagggaaaatgagttgtgtttgattcctaatgtttatg |
7154715 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 26 - 102
Target Start/End: Original strand, 7141869 - 7141945
Alignment:
| Q |
26 |
ggatttggatatgactgaacattatggactggctattggaaagaaaagtgatttgtgtttgattcccactgtttatg |
102 |
Q |
| |
|
|||||||||||||| ||| ||| |||||| | |||||| ||||| ||| |||||||||||||| |||||||||| |
|
|
| T |
7141869 |
ggatttggatatgatagaagattttggactaacagttggaaggaaaaatgagttgtgtttgattccaactgtttatg |
7141945 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University