View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2675_low_42 (Length: 227)
Name: NF2675_low_42
Description: NF2675
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2675_low_42 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 227; Significance: 1e-125; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 1 - 227
Target Start/End: Original strand, 30876025 - 30876251
Alignment:
| Q |
1 |
tagggcttgtcttatattagacaataaacctggttgatattcacaacatagtgatgctttaattgaaaaaggaaaaccgttccaacctccctcttgttct |
100 |
Q |
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| T |
30876025 |
tagggcttgtcttatattagacaataaacctggttgatattcacaacatagtgatgctttaattgaaaaaggaaaaccgttccaacctccctcttgttct |
30876124 |
T |
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| Q |
101 |
tcaacacttatttcatcattgtcctttggtatcattaaaccttcacatgcttgtgtttcattcctttttagctctttcaagtgtctaactacttcaccaa |
200 |
Q |
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| T |
30876125 |
tcaacacttatttcatcattgtcctttggtatcattaaaccttcacatgcttgtgtttcattcctttttagctctttcaagtgtctaactacttcaccaa |
30876224 |
T |
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| Q |
201 |
gtaatgatgctttgtccatctgtgtca |
227 |
Q |
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| T |
30876225 |
gtaatgatgctttgtccatctgtgtca |
30876251 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 66; Significance: 3e-29; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 5 - 218
Target Start/End: Original strand, 39331670 - 39331883
Alignment:
| Q |
5 |
gcttgtcttatattagacaataaacctggttgatattcacaacatagtgatgctttaattgaaaaaggaaaaccgttccaacctccctcttgttcttcaa |
104 |
Q |
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| T |
39331670 |
gcttttcttatatcagacaataaaccgggtttatattcacaacataatgatgctctaattgaataaggcaaaccatttaatccaccttcttgtgattcaa |
39331769 |
T |
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| Q |
105 |
cacttatttcatcattgtcctttggtatcattaaaccttcacatgcttgtgtttcattcctttttagctctttcaagtgtctaactacttcaccaagtaa |
204 |
Q |
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| T |
39331770 |
ctcttatctcatcactgtcttttggaataactaacccttcacttgcttgtgctgcatttgttttcagctctttcaaatgtgtaataacttcagctagtaa |
39331869 |
T |
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| Q |
205 |
tgatgctttgtcca |
218 |
Q |
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| T |
39331870 |
ggatgctttgtcca |
39331883 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 99 - 218
Target Start/End: Original strand, 25574662 - 25574781
Alignment:
| Q |
99 |
cttcaacacttatttcatcattgtcctttggtatcattaaaccttcacatgcttgtgtttcattcctttttagctctttcaagtgtctaactacttcacc |
198 |
Q |
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| T |
25574662 |
cttcaactcttatctcatcactgtcttttggaataattaacccttcacttgcttgtgttgcatttgttttcagctctttcaaatgtgtaataacttcaac |
25574761 |
T |
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| Q |
199 |
aagtaatgatgctttgtcca |
218 |
Q |
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| T |
25574762 |
aaataaggatgttttgtcca |
25574781 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 5 - 78
Target Start/End: Original strand, 32726444 - 32726517
Alignment:
| Q |
5 |
gcttgtcttatattagacaataaacctggttgatattcacaacatagtgatgctttaattgaaaaaggaaaacc |
78 |
Q |
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| T |
32726444 |
gcttttcttatatcagacaataaatccggtttgtattgacaacatagtgatgctctaattgaataagggaaacc |
32726517 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 5 - 78
Target Start/End: Original strand, 44187308 - 44187381
Alignment:
| Q |
5 |
gcttgtcttatattagacaataaacctggttgatattcacaacatagtgatgctttaattgaaaaaggaaaacc |
78 |
Q |
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| T |
44187308 |
gcttttcttatatcagacaataaatccggtttgtattgacaacatagtgatgctctaattgaataagggaaacc |
44187381 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 48 - 218
Target Start/End: Original strand, 5538420 - 5538591
Alignment:
| Q |
48 |
atagtgatgctttaattgaaaaaggaaaaccgttccaacctccctcttgttcttcaacactt-atttcatcattgtcctttggtatcattaaaccttcac |
146 |
Q |
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| T |
5538420 |
atagtgatgctctaattgaataagggaaaccatttaatccaccttcttgtgattcaactctttatctcatcattgtcttttggaataattaacccttcac |
5538519 |
T |
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| Q |
147 |
atgcttgtgtttcattcctttttagctctttcaagtgtctaactacttcaccaagtaatgatgctttgtcca |
218 |
Q |
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| T |
5538520 |
ttgcttgcgctgcatttgttttcaactctttcaaatgtgtaataacttcagctagtaaggatgttttgtcca |
5538591 |
T |
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