View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2675_low_5 (Length: 517)

Name: NF2675_low_5
Description: NF2675
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2675_low_5
NF2675_low_5
[»] chr8 (17 HSPs)
chr8 (12-501)||(34290782-34291272)
chr8 (43-168)||(12728856-12728981)
chr8 (322-426)||(11415142-11415246)
chr8 (339-407)||(20672757-20672825)
chr8 (322-414)||(11569435-11569527)
chr8 (362-421)||(9956832-9956891)
chr8 (328-379)||(31875579-31875630)
chr8 (253-308)||(43907811-43907866)
chr8 (353-423)||(27028822-27028892)
chr8 (443-488)||(4271830-4271875)
chr8 (322-379)||(5069732-5069789)
chr8 (346-395)||(8066772-8066821)
chr8 (322-395)||(25869244-25869317)
chr8 (269-309)||(2487933-2487973)
chr8 (322-414)||(5088852-5088944)
chr8 (269-309)||(6496816-6496856)
chr8 (322-414)||(39551187-39551279)
[»] chr7 (6 HSPs)
chr7 (48-140)||(28518956-28519048)
chr7 (328-414)||(3610724-3610810)
chr7 (346-416)||(24363603-24363673)
chr7 (361-426)||(20269564-20269629)
chr7 (323-376)||(39539760-39539813)
chr7 (341-389)||(45901178-45901226)
[»] chr1 (17 HSPs)
chr1 (269-414)||(27140478-27140623)
chr1 (334-412)||(1565525-1565603)
chr1 (259-307)||(17631019-17631067)
chr1 (326-394)||(26184768-26184836)
chr1 (269-311)||(2522699-2522741)
chr1 (346-416)||(44940339-44940408)
chr1 (356-426)||(49938735-49938805)
chr1 (362-395)||(601060-601093)
chr1 (336-377)||(4202143-4202184)
chr1 (362-407)||(4700084-4700129)
chr1 (336-389)||(6292518-6292571)
chr1 (336-414)||(28689444-28689524)
chr1 (362-394)||(4025104-4025136)
chr1 (323-379)||(11639395-11639451)
chr1 (362-414)||(25479581-25479633)
chr1 (340-416)||(37240840-37240916)
chr1 (338-414)||(44422699-44422775)
[»] chr4 (16 HSPs)
chr4 (322-426)||(2996561-2996665)
chr4 (340-421)||(6978958-6979039)
chr4 (442-484)||(7342077-7342119)
chr4 (339-395)||(29467619-29467675)
chr4 (353-421)||(54426036-54426104)
chr4 (322-389)||(19304951-19305018)
chr4 (322-395)||(6987719-6987792)
chr4 (340-421)||(11264294-11264375)
chr4 (345-390)||(39438539-39438584)
chr4 (353-426)||(41336748-41336821)
chr4 (269-309)||(1017133-1017173)
chr4 (362-426)||(7694028-7694092)
chr4 (354-426)||(16199991-16200063)
chr4 (353-421)||(17822874-17822942)
chr4 (265-309)||(18512436-18512480)
chr4 (362-426)||(29388602-29388666)
[»] chr6 (5 HSPs)
chr6 (353-426)||(34430470-34430543)
chr6 (321-375)||(2034423-2034477)
chr6 (353-426)||(6536603-6536676)
chr6 (322-395)||(34939763-34939836)
chr6 (322-375)||(2027384-2027437)
[»] chr5 (21 HSPs)
chr5 (341-414)||(5284445-5284518)
chr5 (322-386)||(11700356-11700420)
chr5 (322-414)||(32172653-32172745)
chr5 (244-309)||(14706184-14706249)
chr5 (336-392)||(14331389-14331445)
chr5 (444-488)||(33348082-33348126)
chr5 (336-412)||(40205066-40205142)
chr5 (354-426)||(43300866-43300938)
chr5 (338-413)||(17258877-17258952)
chr5 (327-422)||(35445826-35445921)
chr5 (336-414)||(2568658-2568736)
chr5 (330-395)||(8177518-8177583)
chr5 (322-375)||(12595694-12595747)
chr5 (353-426)||(16937892-16937965)
chr5 (361-426)||(25461079-25461144)
chr5 (323-416)||(41957430-41957523)
chr5 (362-426)||(7907869-7907933)
chr5 (362-414)||(10272449-10272501)
chr5 (362-414)||(34975364-34975416)
chr5 (362-426)||(36318762-36318826)
chr5 (362-426)||(36325999-36326063)
[»] chr2 (13 HSPs)
chr2 (338-426)||(1810653-1810740)
chr2 (346-414)||(39983342-39983410)
chr2 (329-399)||(25790141-25790211)
chr2 (322-395)||(9478318-9478391)
chr2 (331-416)||(10563545-10563630)
chr2 (261-414)||(43985209-43985362)
chr2 (363-422)||(9477944-9478003)
chr2 (362-413)||(13630299-13630350)
chr2 (353-418)||(12289793-12289858)
chr2 (333-414)||(33942150-33942231)
chr2 (353-426)||(41851523-41851596)
chr2 (459-487)||(15866811-15866839)
chr2 (322-394)||(41042000-41042072)
[»] chr3 (11 HSPs)
chr3 (361-426)||(33231716-33231780)
chr3 (262-311)||(41848634-41848683)
chr3 (323-395)||(27290880-27290952)
chr3 (356-427)||(30443880-30443951)
chr3 (259-309)||(22667508-22667558)
chr3 (259-309)||(22724147-22724197)
chr3 (329-395)||(30923883-30923949)
chr3 (262-311)||(31337330-31337379)
chr3 (362-426)||(1816571-1816635)
chr3 (326-414)||(9279308-9279396)
chr3 (354-426)||(47132319-47132391)
[»] scaffold0003 (1 HSPs)
scaffold0003 (328-411)||(306329-306412)
[»] scaffold0141 (1 HSPs)
scaffold0141 (255-309)||(9689-9743)


Alignment Details
Target: chr8 (Bit Score: 471; Significance: 0; HSPs: 17)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 471; E-Value: 0
Query Start/End: Original strand, 12 - 501
Target Start/End: Complemental strand, 34291272 - 34290782
Alignment:
Q  12 atgaagggactagtagtagagaaaaatgatatcatgccagataacttgtttgcttcatcctcagacagtttagcagcaaatgcattaaagctctttgtgt 111  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34291272 atgaagggactagtagtagaaaaaaatgatatcatgccagataacttgtttgcttcatcctcagacagtttagcagcaaatgcattaaagctctttgtgt 34291173  T
Q  112 agctgtatactatggattctttggcttcaacatggctgccaagtaaacaaagattaagaaacaatagaacagaaat-aaatcagaataaccaaattaatt 210  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  34291172 agctgtatactatggattctttggcttcaacatggctgccaagtaaacaaagattaagaaacaatagaacagaaatgaaatcagaataaccaaattaatt 34291073  T
Q  211 tctctcagatggcattgtgataataatgcctttaattttgaaactataggcctatttcgattgacttgtttgagttcatctactgacataaacacttgta 310  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34291072 tctctcagatggcattgtgataataatgcctttaattttgaaactagaggcctatttcgattgacttgtttgagttcatctactgacataaacacttgta 34290973  T
Q  311 attttagttacgagagtttatggagacagcttattacatgtccataagcctttttcagcttattttcattaactctccaggatagattagaaaaacaact 410  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34290972 attttagttatgagagtttatggagacagcttattacatgtccataagcctttttcagcttattttcattaactctccaggatagattagaaaaacaact 34290873  T
Q  411 tataacatatacaaaagtagtctgacttgtatgataagcatttacattataagcacttaattaaaatgtttatccaaattccaaatagggt 501  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34290872 tataacatatacaaaagtagtctgacttgtatgataagcatttacattataagcacttaattaaaatgtttatccaaattccaaatagggt 34290782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 98; E-Value: 5e-48
Query Start/End: Original strand, 43 - 168
Target Start/End: Original strand, 12728856 - 12728981
Alignment:
Q  43 tcatgccagataacttgtttgcttcatcctcagacagtttagcagcaaatgcattaaagctctttgtgtagctgtatactatggattctttggcttcaac 142  Q
    |||||| |||||||||||| ||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  12728856 tcatgctagataacttgttggcttcatcctcggatagtttagcagcaaatgcattaaagctctttgtgtagctgtatactatggactctttggcttcaac 12728955  T
Q  143 atggctgccaagtaaacaaagattaa 168  Q
     ||||||| |||||||||||||||||    
T  12728956 gtggctgctaagtaaacaaagattaa 12728981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 322 - 426
Target Start/End: Complemental strand, 11415246 - 11415142
Alignment:
Q  322 gagagtttatggagacagcttattacatgtccataagcctttttcagcttattttcattaactctccaggatagattagaaaaacaacttataacatata 421  Q
    ||||||||||||| ||||||||| ||||||||||||||  || ||||||||||||||  ||||||| ||||||| |||  |||||| | |||||| ||||    
T  11415246 gagagtttatggaaacagcttataacatgtccataagctattctcagcttattttcacaaactctctaggatagcttatgaaaacagcgtataacttata 11415147  T
Q  422 caaaa 426  Q
     ||||    
T  11415146 taaaa 11415142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 339 - 407
Target Start/End: Complemental strand, 20672825 - 20672757
Alignment:
Q  339 gcttattacatgtccataagcctttttcagcttattttcattaactctccaggatagattagaaaaaca 407  Q
    |||||| |||||| |||||||  |||||||||||||||||| | ||||||||||||| ||| |||||||    
T  20672825 gcttatgacatgttcataagctgttttcagcttattttcataagctctccaggatagcttataaaaaca 20672757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 322 - 414
Target Start/End: Original strand, 11569435 - 11569527
Alignment:
Q  322 gagagtttatggagacagcttattacatgtccataagcctttttcagcttattttcattaactctccaggatagattagaaaaacaacttata 414  Q
    ||||| ||||||| ||||||||| |||||| ||||||   |||||||||||||||||  | ||||||| ||||| |||  |||||| ||||||    
T  11569435 gagagcttatggaaacagcttatgacatgtacataagttgttttcagcttattttcaaaatctctccatgatagcttatgaaaacagcttata 11569527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 362 - 421
Target Start/End: Original strand, 9956832 - 9956891
Alignment:
Q  362 ttttcagcttattttcattaactctccaggatagattagaaaaacaacttataacatata 421  Q
    |||||||||||||||||| |  |||||| |||||||||  ||||||||||||||| ||||    
T  9956832 ttttcagcttattttcataagttctccaagatagattatgaaaacaacttataacttata 9956891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 328 - 379
Target Start/End: Original strand, 31875579 - 31875630
Alignment:
Q  328 ttatggagacagcttattacatgtccataagcctttttcagcttattttcat 379  Q
    ||||||| ||| ||||| ||||||||||||||| |||||| |||||||||||    
T  31875579 ttatggaaacaacttatgacatgtccataagccattttcaacttattttcat 31875630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 253 - 308
Target Start/End: Original strand, 43907811 - 43907866
Alignment:
Q  253 actataggcctatttcgattgacttgtttgagttcatctactgacataaacacttg 308  Q
    ||||||||||||||| |||| |||  |||||||| ||||| |||||||||||||||    
T  43907811 actataggcctattttgattaactcatttgagtttatctattgacataaacacttg 43907866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 353 - 423
Target Start/End: Complemental strand, 27028892 - 27028822
Alignment:
Q  353 cataagcctttttcagcttattttcattaactctccaggatagattagaaaaacaacttataacatataca 423  Q
    |||||||  |||||||||||||||||| | ||||||| ||||| |||  |||||| |||||| ||||||||    
T  27028892 cataagctattttcagcttattttcataagctctccaagatagcttatgaaaacagcttatagcatataca 27028822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 443 - 488
Target Start/End: Complemental strand, 4271875 - 4271830
Alignment:
Q  443 gataagcatttacattataagcacttaattaaaatgtttatccaaa 488  Q
    |||||||||||| | |||||||||||||||||| |||||| |||||    
T  4271875 gataagcatttatactataagcacttaattaaactgtttagccaaa 4271830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 322 - 379
Target Start/End: Complemental strand, 5069789 - 5069732
Alignment:
Q  322 gagagtttatggagacagcttattacatgtccataagcctttttcagcttattttcat 379  Q
    ||||| ||||||| ||| ||||| |||||| |||||| | ||||||||||||||||||    
T  5069789 gagagcttatggaaacatcttataacatgttcataagtcattttcagcttattttcat 5069732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 346 - 395
Target Start/End: Original strand, 8066772 - 8066821
Alignment:
Q  346 acatgtccataagcctttttcagcttattttcattaactctccaggatag 395  Q
    |||||||||||||  ||||||||||||||||||| |||||| ||| ||||    
T  8066772 acatgtccataagtttttttcagcttattttcataaactctacagtatag 8066821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 322 - 395
Target Start/End: Original strand, 25869244 - 25869317
Alignment:
Q  322 gagagtttatggagacagcttattacatgtccataagcctttttcagcttattttcattaactctccaggatag 395  Q
    |||||| |||||| | | ||||| |||||||||||||   |||||||||||||| ||| ||||||||| |||||    
T  25869244 gagagtctatggaaataacttatgacatgtccataagttgttttcagcttatttccataaactctccatgatag 25869317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 269 - 309
Target Start/End: Original strand, 2487933 - 2487973
Alignment:
Q  269 gattgacttgtttgagttcatctactgacataaacacttgt 309  Q
    ||||| ||| ||||||||||||||||||||||| |||||||    
T  2487933 gattggcttatttgagttcatctactgacataagcacttgt 2487973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 322 - 414
Target Start/End: Complemental strand, 5088944 - 5088852
Alignment:
Q  322 gagagtttatggagacagcttattacatgtccataagcctttttcagcttattttcattaactctccaggatagattagaaaaacaacttata 414  Q
    ||||| ||||||| |||| |||| ||||||||||||||  |||||| |||||||  || | ||||||||||| | ||   |||||||||||||    
T  5088944 gagagcttatggaaacagtttataacatgtccataagctgttttcaacttatttcaataagctctccaggatcgcttgtgaaaacaacttata 5088852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 269 - 309
Target Start/End: Original strand, 6496816 - 6496856
Alignment:
Q  269 gattgacttgtttgagttcatctactgacataaacacttgt 309  Q
    |||||||||||||||||| ||||||| |||||| |||||||    
T  6496816 gattgacttgtttgagtttatctactaacataatcacttgt 6496856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 322 - 414
Target Start/End: Original strand, 39551187 - 39551279
Alignment:
Q  322 gagagtttatggagacagcttattacatgtccataagcctttttcagcttattttcattaactctccaggatagattagaaaaacaacttata 414  Q
    |||| |||||||| ||| ||||| ||||||||| ||||  |||| | |||||||| || | |||||||||| || |||  |||||||||||||    
T  39551187 gagaatttatggaaacaacttatgacatgtccaaaagctgtttttaacttatttttataagctctccaggaaagcttatgaaaacaacttata 39551279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 53; Significance: 3e-21; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 48 - 140
Target Start/End: Complemental strand, 28519048 - 28518956
Alignment:
Q  48 ccagataacttgtttgcttcatcctcagacagtttagcagcaaatgcattaaagctctttgtgtagctgtatactatggattctttggcttca 140  Q
    ||||||||||| ||  ||||||| || |||||||| |||||||||||||| ||||||||||||||||| ||||| ||||| ||||||||||||    
T  28519048 ccagataacttattgacttcatcttctgacagttttgcagcaaatgcattgaagctctttgtgtagctatatacaatggactctttggcttca 28518956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 328 - 414
Target Start/End: Original strand, 3610724 - 3610810
Alignment:
Q  328 ttatggagacagcttattacatgtccataagcctttttcagcttattttcattaactctccaggatagattagaaaaacaacttata 414  Q
    ||||||| |||||| || ||||||||||||||||||||||||||||||  || | ||||| ||||||| |||  |||||||||||||    
T  3610724 ttatggaaacagctaatgacatgtccataagcctttttcagcttatttctataagctctctaggatagtttacgaaaacaacttata 3610810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 346 - 416
Target Start/End: Original strand, 24363603 - 24363673
Alignment:
Q  346 acatgtccataagcctttttcagcttattttcattaactctccaggatagattagaaaaacaacttataac 416  Q
    |||||||||||||   |||||||||||||| ||| | ||||||||||||| |||  |||||||||||||||    
T  24363603 acatgtccataagttgttttcagcttatttccataacctctccaggatagcttatgaaaacaacttataac 24363673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 361 - 426
Target Start/End: Complemental strand, 20269629 - 20269564
Alignment:
Q  361 tttttcagcttattttcattaactctccaggatagattagaaaaacaacttataacatatacaaaa 426  Q
    ||||||| ||||||||||| || ||||||  | || |||| ||||||||||||||||| |||||||    
T  20269629 tttttcaacttattttcataaattctccaatacagcttagtaaaacaacttataacatttacaaaa 20269564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 323 - 376
Target Start/End: Original strand, 39539760 - 39539813
Alignment:
Q  323 agagtttatggagacagcttattacatgtccataagcctttttcagcttatttt 376  Q
    |||||||| ||| ||| ||||| ||||||||||||||  |||||||||||||||    
T  39539760 agagtttacggaaacaacttatgacatgtccataagctgttttcagcttatttt 39539813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 341 - 389
Target Start/End: Complemental strand, 45901226 - 45901178
Alignment:
Q  341 ttattacatgtccataagcctttttcagcttattttcattaactctcca 389  Q
    |||| |||||||||||||| |||||||| |||||||||| | |||||||    
T  45901226 ttataacatgtccataagcttttttcagtttattttcataagctctcca 45901178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 46; Significance: 5e-17; HSPs: 17)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 269 - 414
Target Start/End: Complemental strand, 27140623 - 27140478
Alignment:
Q  269 gattgacttgtttgagttcatctactgacataaacacttgtaattttagttacgagagtttatggagacagcttattacatgtccataagcctttttcag 368  Q
    ||||||||| | |||| | ||||| ||||||||||| |||||| | |  ||  ||||||||| ||| ||||||||| |||||||||||||   |||||||    
T  27140623 gattgacttatatgagcttatctattgacataaacaattgtaagtctctttgagagagtttaaggaaacagcttatgacatgtccataagttgttttcag 27140524  T
Q  369 cttattttcattaactctccaggatagattagaaaaacaacttata 414  Q
    ||||||| ||| | ||||||| ||||| ||| ||||||| ||||||    
T  27140523 cttatttgcataagctctccatgatagcttataaaaacagcttata 27140478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 334 - 412
Target Start/End: Original strand, 1565525 - 1565603
Alignment:
Q  334 agacagcttattacatgtccataagcctttttcagcttattttcattaactctccaggatagattagaaaaacaactta 412  Q
    ||||||||||| |||||| |||||||  |||||||||||||||||| | |||||||  ||||||||  |||||| ||||    
T  1565525 agacagcttatgacatgtgcataagctgttttcagcttattttcatgagctctccaaaatagattaagaaaacagctta 1565603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 259 - 307
Target Start/End: Original strand, 17631019 - 17631067
Alignment:
Q  259 ggcctatttcgattgacttgtttgagttcatctactgacataaacactt 307  Q
    ||||||||| ||||||| |||||||||| ||||| ||||||||||||||    
T  17631019 ggcctatttggattgacatgtttgagtttatctattgacataaacactt 17631067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 326 - 394
Target Start/End: Complemental strand, 26184836 - 26184768
Alignment:
Q  326 gtttatggagacagcttattacatgtccataagcctttttcagcttattttcattaactctccaggata 394  Q
    ||||| ||| ||||||||| ||||||||||||||  ||||||| |||||| ||| | ||||||||||||    
T  26184836 gtttacggaaacagcttatgacatgtccataagctgttttcagattatttccataagctctccaggata 26184768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 269 - 311
Target Start/End: Complemental strand, 2522741 - 2522699
Alignment:
Q  269 gattgacttgtttgagttcatctactgacataaacacttgtaa 311  Q
    ||||||||| |||||||| |||||||| |||||||||||||||    
T  2522741 gattgacttatttgagtttatctactggcataaacacttgtaa 2522699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 346 - 416
Target Start/End: Complemental strand, 44940408 - 44940339
Alignment:
Q  346 acatgtccataagcctttttcagcttattttcattaactctccaggatagattagaaaaacaacttataac 416  Q
    |||||||||||||  ||||||||||||||| ||  | |||| ||||||||||||  |||||||||||||||    
T  44940408 acatgtccataagt-tttttcagcttatttccacaacctcttcaggatagattatgaaaacaacttataac 44940339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 356 - 426
Target Start/End: Complemental strand, 49938805 - 49938735
Alignment:
Q  356 aagcctttttcagcttattttcattaactctccaggatagattagaaaaacaacttataacatatacaaaa 426  Q
    |||| ||||||| ||||||||||| |  |||| |  |||| ||| ||||||||||||||||||||||||||    
T  49938805 aagcttttttcaacttattttcataagttctctaatatagcttataaaaacaacttataacatatacaaaa 49938735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 362 - 395
Target Start/End: Complemental strand, 601093 - 601060
Alignment:
Q  362 ttttcagcttattttcattaactctccaggatag 395  Q
    |||||||||||||||||| |||||||||||||||    
T  601093 ttttcagcttattttcataaactctccaggatag 601060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 336 - 377
Target Start/End: Original strand, 4202143 - 4202184
Alignment:
Q  336 acagcttattacatgtccataagcctttttcagcttattttc 377  Q
    ||||||||| ||||||||||||||  ||||||||||||||||    
T  4202143 acagcttatgacatgtccataagctattttcagcttattttc 4202184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 362 - 407
Target Start/End: Original strand, 4700084 - 4700129
Alignment:
Q  362 ttttcagcttattttcattaactctccaggatagattagaaaaaca 407  Q
    |||||||||||||||||| | ||||||||||||| ||| |||||||    
T  4700084 ttttcagcttattttcataagctctccaggatagtttataaaaaca 4700129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 336 - 389
Target Start/End: Complemental strand, 6292571 - 6292518
Alignment:
Q  336 acagcttattacatgtccataagcctttttcagcttattttcattaactctcca 389  Q
    ||||||||| |||||| |||||||  |||||||||||||||||| | |||||||    
T  6292571 acagcttatgacatgttcataagctgttttcagcttattttcataagctctcca 6292518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 336 - 414
Target Start/End: Original strand, 28689444 - 28689524
Alignment:
Q  336 acagcttattacatgtccataagcctttttcagcttattttcattaactctccaggatagattaga--aaaacaacttata 414  Q
    ||||||||| |||||||||||||   |||||||||||||||||| | || |||| ||||| ||| |  |||||||||||||    
T  28689444 acagcttatgacatgtccataagttgttttcagcttattttcataagctttccaagatagcttatatgaaaacaacttata 28689524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 362 - 394
Target Start/End: Complemental strand, 4025136 - 4025104
Alignment:
Q  362 ttttcagcttattttcattaactctccaggata 394  Q
    |||||||||||||| ||||||||||||||||||    
T  4025136 ttttcagcttatttccattaactctccaggata 4025104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 323 - 379
Target Start/End: Original strand, 11639395 - 11639451
Alignment:
Q  323 agagtttatggagacagcttattacatgtccataagcctttttcagcttattttcat 379  Q
    |||| ||||| | ||||||||| ||||||||||||||  |||| |||||||||||||    
T  11639395 agagcttatgaaaacagcttatgacatgtccataagctgtttttagcttattttcat 11639451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 362 - 414
Target Start/End: Complemental strand, 25479633 - 25479581
Alignment:
Q  362 ttttcagcttattttcattaactctccaggatagattagaaaaacaacttata 414  Q
    |||||||||||||||||| | ||||| ||||||| |||  |||||||||||||    
T  25479633 ttttcagcttattttcataagctctctaggatagcttatgaaaacaacttata 25479581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 340 - 416
Target Start/End: Complemental strand, 37240916 - 37240840
Alignment:
Q  340 cttattacatgtccataagcctttttcagcttattttcattaactctccaggatagattagaaaaacaacttataac 416  Q
    |||||||||||| ||||||   || ||||||||||||||| ||| ||| ||||||| |||  |||||| ||||||||    
T  37240916 cttattacatgttcataagatgttatcagcttattttcataaaccctcaaggatagtttatgaaaacagcttataac 37240840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 338 - 414
Target Start/End: Complemental strand, 44422775 - 44422699
Alignment:
Q  338 agcttattacatgtccataagcctttttcagcttattttcattaactctccaggatagattagaaaaacaacttata 414  Q
    ||||||| ||||||||||||||    | |||||||||||||| | ||||||||||||| ||| ||||| | ||||||    
T  44422775 agcttatgacatgtccataagctgactacagcttattttcataagctctccaggatagcttataaaaatagcttata 44422699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 16)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 322 - 426
Target Start/End: Complemental strand, 2996665 - 2996561
Alignment:
Q  322 gagagtttatggagacagcttattacatgtccataagcctttttcagcttattttcattaactctccaggatagattagaaaaacaacttataacatata 421  Q
    ||||| ||||| | ||| ||||| |||||||||||||| ||||||| |||||||||||   ||||||| ||||| |||  ||||||||||||||| ||||    
T  2996665 gagagcttatgaaaacaacttatgacatgtccataagcttttttcaacttattttcatacgctctccaagatagcttatgaaaacaacttataacttata 2996566  T
Q  422 caaaa 426  Q
     ||||    
T  2996565 taaaa 2996561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 340 - 421
Target Start/End: Original strand, 6978958 - 6979039
Alignment:
Q  340 cttattacatgtccataagcctttttcagcttattttcattaactctccaggatagattagaaaaacaacttataacatata 421  Q
    ||||| ||||||| ||||||  |||||||||||||||||| ||||||  ||||| | ||| |||||||||||||| ||||||    
T  6978958 cttatgacatgtctataagctgttttcagcttattttcataaactctttaggatggcttataaaaacaacttatagcatata 6979039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 442 - 484
Target Start/End: Complemental strand, 7342119 - 7342077
Alignment:
Q  442 tgataagcatttacattataagcacttaattaaaatgtttatc 484  Q
    ||||||||||||| | |||||||||||||||||||||||||||    
T  7342119 tgataagcatttatactataagcacttaattaaaatgtttatc 7342077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 339 - 395
Target Start/End: Original strand, 29467619 - 29467675
Alignment:
Q  339 gcttattacatgtccataagcctttttcagcttattttcattaactctccaggatag 395  Q
    |||||| ||||||||||||||  |||||||||||||| ||| ||||||| |||||||    
T  29467619 gcttatgacatgtccataagctgttttcagcttatttccataaactctctaggatag 29467675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 353 - 421
Target Start/End: Complemental strand, 54426104 - 54426036
Alignment:
Q  353 cataagcctttttcagcttattttcattaactctccaggatagattagaaaaacaacttataacatata 421  Q
    ||||||| |||||||  |||||||||| |  ||||||  |||||||| |||||||||||||||||||||    
T  54426104 cataagcttttttcaagttattttcataagttctccaatatagattataaaaacaacttataacatata 54426036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 322 - 389
Target Start/End: Complemental strand, 19305018 - 19304951
Alignment:
Q  322 gagagtttatggagacagcttattacatgtccataagcctttttcagcttattttcattaactctcca 389  Q
    |||| ||| |||| ||||||||| |||||||||||||   |||||||||| ||| |||||||||||||    
T  19305018 gagaatttgtggaaacagcttatgacatgtccataagttgttttcagcttgtttccattaactctcca 19304951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 322 - 395
Target Start/End: Original strand, 6987719 - 6987792
Alignment:
Q  322 gagagtttatggagacagcttattacatgtccataagcctttttcagcttattttcattaactctccaggatag 395  Q
    ||||| ||||||| ||| ||||| |||||||||||| |  |||||| ||||||| ||| | |||||||||||||    
T  6987719 gagagcttatggatacaacttatgacatgtccataaactattttcaacttatttccataagctctccaggatag 6987792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 340 - 421
Target Start/End: Complemental strand, 11264375 - 11264294
Alignment:
Q  340 cttattacatgtccataagcctttttcagcttattttcattaactctccaggatagattagaaaaacaacttataacatata 421  Q
    ||||| |||||||||||| |  |||||| ||||||| ||| | ||||| ||||| | |||  ||||||||||||||||||||    
T  11264375 cttatgacatgtccataaactgttttcaacttatttccataagctctctaggatggcttatgaaaacaacttataacatata 11264294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 345 - 390
Target Start/End: Original strand, 39438539 - 39438584
Alignment:
Q  345 tacatgtccataagcctttttcagcttattttcattaactctccag 390  Q
    ||||||||||||||   |||||| ||||||||||||||||||||||    
T  39438539 tacatgtccataagttgttttcaacttattttcattaactctccag 39438584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 353 - 426
Target Start/End: Complemental strand, 41336821 - 41336748
Alignment:
Q  353 cataagcctttttcagcttattttcattaactctccaggatagattagaaaaacaacttataacatatacaaaa 426  Q
    ||||||| ||||||| ||||||||| | || ||| ||   ||| |||||||||||| |||||||||||||||||    
T  41336821 cataagcttttttcaacttattttcgtaaattcttcaccctagcttagaaaaacaatttataacatatacaaaa 41336748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 269 - 309
Target Start/End: Complemental strand, 1017173 - 1017133
Alignment:
Q  269 gattgacttgtttgagttcatctactgacataaacacttgt 309  Q
    ||||||||| |||||| | ||||||||||||||||||||||    
T  1017173 gattgacttatttgagctaatctactgacataaacacttgt 1017133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 362 - 426
Target Start/End: Original strand, 7694028 - 7694092
Alignment:
Q  362 ttttcagcttattttcattaactctccaggatagattagaaaaacaacttataacatatacaaaa 426  Q
    |||||||||||||| ||| ||||||||||||||  |||  |||||| |||||| | |||||||||    
T  7694028 ttttcagcttatttccataaactctccaggataacttatgaaaacagcttatagcttatacaaaa 7694092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 354 - 426
Target Start/End: Original strand, 16199991 - 16200063
Alignment:
Q  354 ataagcctttttcagcttattttcattaactctccaggatagattagaaaaacaacttataacatatacaaaa 426  Q
    |||||||||||| ||||||||||||| |   ||||| ||||| |||  |||||| |||||| |||||||||||    
T  16199991 ataagccttttttagcttattttcataagtcctccaagatagcttatgaaaacagcttatagcatatacaaaa 16200063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 353 - 421
Target Start/End: Original strand, 17822874 - 17822942
Alignment:
Q  353 cataagcctttttcagcttattttcattaactctccaggatagattagaaaaacaacttataacatata 421  Q
    ||||||| ||||| ||||||||||||| |  |||||| ||||| |||  ||||||||||||| ||||||    
T  17822874 cataagctttttttagcttattttcataagttctccaagatagcttatgaaaacaacttatagcatata 17822942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 265 - 309
Target Start/End: Original strand, 18512436 - 18512480
Alignment:
Q  265 tttcgattgacttgtttgagttcatctactgacataaacacttgt 309  Q
    |||||||| |||| |||||| | ||||||||||||||||||||||    
T  18512436 tttcgattaacttatttgagcttatctactgacataaacacttgt 18512480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 362 - 426
Target Start/End: Complemental strand, 29388666 - 29388602
Alignment:
Q  362 ttttcagcttattttcattaactctccaggatagattagaaaaacaacttataacatatacaaaa 426  Q
    |||||| ||||||||||| || ||||||| |||| ||| |||||| |||||| |||| |||||||    
T  29388666 ttttcaacttattttcataaattctccagtatagcttataaaaactacttatcacatctacaaaa 29388602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 38; Significance: 0.000000000003; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 353 - 426
Target Start/End: Original strand, 34430470 - 34430543
Alignment:
Q  353 cataagcctttttcagcttattttcattaactctccaggatagattagaaaaacaacttataacatatacaaaa 426  Q
    ||||||| ||||||||||||||||||| |  |||||| ||||| |||  |||||| ||||||||||||||||||    
T  34430470 cataagcttttttcagcttattttcataacttctccaagatagcttatgaaaacaccttataacatatacaaaa 34430543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 321 - 375
Target Start/End: Original strand, 2034423 - 2034477
Alignment:
Q  321 cgagagtttatggagacagcttattacatgtccataagcctttttcagcttattt 375  Q
    |||||||||||||| ||||||||| |||| |||||||||  ||||||||||||||    
T  2034423 cgagagtttatggaaacagcttatgacatttccataagctgttttcagcttattt 2034477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 353 - 426
Target Start/End: Complemental strand, 6536676 - 6536603
Alignment:
Q  353 cataagcctttttcagcttattttcattaactctccaggatagattagaaaaacaacttataacatatacaaaa 426  Q
    ||||||| ||||||| ||||||||||| || ||||||  |||| ||  |||||||||||||| |||||||||||    
T  6536676 cataagcttttttcaacttattttcataaattctccaatatagcttctaaaaacaacttatagcatatacaaaa 6536603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 322 - 395
Target Start/End: Complemental strand, 34939836 - 34939763
Alignment:
Q  322 gagagtttatggagacagcttattacatgtccataagcctttttcagcttattttcattaactctccaggatag 395  Q
    ||||| ||| ||| ||||||||| ||||||||||||    |||||||||||||| ||| |||||||||||||||    
T  34939836 gagagcttacggaaacagcttatgacatgtccataaattgttttcagcttatttccataaactctccaggatag 34939763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 322 - 375
Target Start/End: Original strand, 2027384 - 2027437
Alignment:
Q  322 gagagtttatggagacagcttattacatgtccataagcctttttcagcttattt 375  Q
    ||||||||||| | ||||||||| |||| |||||||||  ||||||||||||||    
T  2027384 gagagtttatgaaaacagcttatgacatttccataagctgttttcagcttattt 2027437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 38; Significance: 0.000000000003; HSPs: 21)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 341 - 414
Target Start/End: Original strand, 5284445 - 5284518
Alignment:
Q  341 ttattacatgtccataagcctttttcagcttattttcattaactctccaggatagattagaaaaacaacttata 414  Q
    |||| |||||||||||||| ||||||||||||||||||||| |||| || |||||  ||  |||||||||||||    
T  5284445 ttatgacatgtccataagcttttttcagcttattttcattagctcttcatgatagcctatgaaaacaacttata 5284518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 322 - 386
Target Start/End: Original strand, 11700356 - 11700420
Alignment:
Q  322 gagagtttatggagacagcttattacatgtccataagcctttttcagcttattttcattaactct 386  Q
    ||||||||||||| ||| ||||| ||||||||||||||  ||||||| |||||||||| ||||||    
T  11700356 gagagtttatggaaacaacttatgacatgtccataagctgttttcagattattttcataaactct 11700420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 322 - 414
Target Start/End: Complemental strand, 32172745 - 32172653
Alignment:
Q  322 gagagtttatggagacagcttattacatgtccataagcctttttcagcttattttcattaactctccaggatagattagaaaaacaacttata 414  Q
    ||||| ||||||| ||| ||||| ||||||||||||||| |||||||||||||| |||||  ||| || ||||| |||  |||||| ||||||    
T  32172745 gagagcttatggaaacaacttatgacatgtccataagccattttcagcttatttccattagttcttcatgatagcttatgaaaacagcttata 32172653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 244 - 309
Target Start/End: Original strand, 14706184 - 14706249
Alignment:
Q  244 aattttgaaactataggcctatttcgattgacttgtttgagttcatctactgacataaacacttgt 309  Q
    |||| |||||||| || ||||||| ||||||||| |||||| | | ||||||||||||||||||||    
T  14706184 aattgtgaaactaaagacctatttggattgacttatttgagcttacctactgacataaacacttgt 14706249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 336 - 392
Target Start/End: Complemental strand, 14331445 - 14331389
Alignment:
Q  336 acagcttattacatgtccataagcctttttcagcttattttcattaactctccagga 392  Q
    ||||||||| ||||||||||||||   ||||||||||||||||| | ||||||||||    
T  14331445 acagcttatgacatgtccataagctgatttcagcttattttcataagctctccagga 14331389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 444 - 488
Target Start/End: Original strand, 33348082 - 33348126
Alignment:
Q  444 ataagcatttacattataagcacttaattaaaatgtttatccaaa 488  Q
    ||||||||||||||||||||| |||||||||| | ||||||||||    
T  33348082 ataagcatttacattataagcgcttaattaaactatttatccaaa 33348126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 336 - 412
Target Start/End: Original strand, 40205066 - 40205142
Alignment:
Q  336 acagcttattacatgtccataagcctttttcagcttattttcattaactctccaggatagattagaaaaacaactta 412  Q
    ||||||||| |||||||||||| |  ||||||||||||||  || | ||||||||||||| |||  |||||||||||    
T  40205066 acagcttataacatgtccataatctgttttcagcttatttctataagctctccaggatagcttatgaaaacaactta 40205142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 354 - 426
Target Start/End: Complemental strand, 43300938 - 43300866
Alignment:
Q  354 ataagcctttttcagcttattttcattaactctccaggatagattagaaaaacaacttataacatatacaaaa 426  Q
    |||||| | ||||||||||||||||| |  |||||| ||||| ||| ||||||||||||||  ||||||||||    
T  43300938 ataagcatgtttcagcttattttcataagttctccaagatagcttacaaaaacaacttataggatatacaaaa 43300866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 338 - 413
Target Start/End: Original strand, 17258877 - 17258952
Alignment:
Q  338 agcttattacatgtccataagcctttttcagcttattttcattaactctccaggatagattagaaaaacaacttat 413  Q
    ||||||| |||||| |||||||  |||||||||||||||||| | |||| |||||||| |||  |||||| |||||    
T  17258877 agcttatgacatgttcataagctgttttcagcttattttcataagctcttcaggatagtttatgaaaacagcttat 17258952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 327 - 422
Target Start/End: Original strand, 35445826 - 35445921
Alignment:
Q  327 tttatggagacagcttattacatgtccataagcctttttcagcttattttcattaactctccaggatagattagaaaaacaacttataacatatac 422  Q
    |||||| | ||||||||| |||||| ||| || | |||||| ||||||||||| || |||||| ||||| ||| || |||| |||||||| |||||    
T  35445826 tttatgaaaacagcttataacatgttcattaggcattttcaccttattttcataaattctccaagatagcttacaagaacaccttataacttatac 35445921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 336 - 414
Target Start/End: Complemental strand, 2568736 - 2568658
Alignment:
Q  336 acagcttattacatgtccataagcctttttcagcttattttcattaactctccaggatagattagaaaaacaacttata 414  Q
    ||||||||| |||| | ||||||   |||| ||||||||||||||| ||||||| ||||| |||  |||||||||||||    
T  2568736 acagcttatgacatattcataagttatttttagcttattttcattagctctccatgatagcttatgaaaacaacttata 2568658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 330 - 395
Target Start/End: Original strand, 8177518 - 8177583
Alignment:
Q  330 atggagacagcttattacatgtccataagcctttttcagcttattttcattaactctccaggatag 395  Q
    ||||| ||||||||| | |||||||||||   ||||||| |||||||||| | |||||||||||||    
T  8177518 atggaaacagcttatgatatgtccataagttgttttcaggttattttcataagctctccaggatag 8177583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 322 - 375
Target Start/End: Original strand, 12595694 - 12595747
Alignment:
Q  322 gagagtttatggagacagcttattacatgtccataagcctttttcagcttattt 375  Q
    ||||| ||| ||| |||||||||| ||||| |||||||| ||||||||||||||    
T  12595694 gagagcttaaggaaacagcttattgcatgttcataagccgttttcagcttattt 12595747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 353 - 426
Target Start/End: Original strand, 16937892 - 16937965
Alignment:
Q  353 cataagcctttttcagcttattttcattaactctccaggatagattagaaaaacaacttataacatatacaaaa 426  Q
    ||||||| ||||||||||||||||| | |  ||||||  ||||  || |||||||||||||| |||||||||||    
T  16937892 cataagcttttttcagcttattttcctaagttctccaatatagcgtataaaaacaacttatagcatatacaaaa 16937965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 361 - 426
Target Start/End: Complemental strand, 25461144 - 25461079
Alignment:
Q  361 tttttcagcttattttcattaactctccaggatagattagaaaaacaacttataacatatacaaaa 426  Q
    ||||||||||||||||||| |  ||||||  | || |||  |||||||||||||||||||||||||    
T  25461144 tttttcagcttattttcatcagttctccaatagagcttatgaaaacaacttataacatatacaaaa 25461079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 323 - 416
Target Start/End: Original strand, 41957430 - 41957523
Alignment:
Q  323 agagtttatggagacagcttattacatgtccataagcctttttcagcttattttcattaactctccaggatagattagaaaaacaacttataac 416  Q
    |||| ||| ||| ||||||||| |||||||||||||   |||||| ||||||||||| |  |||| ||||||| |||  |||||| ||||||||    
T  41957430 agagcttacggaaacagcttatgacatgtccataagttgttttcatcttattttcataagttctcaaggatagcttatgaaaacagcttataac 41957523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 362 - 426
Target Start/End: Complemental strand, 7907933 - 7907869
Alignment:
Q  362 ttttcagcttattttcattaactctccaggatagattagaaaaacaacttataacatatacaaaa 426  Q
    ||||||||||| |||||| | ||||||| || || |||  ||||||||||||||| |||||||||    
T  7907933 ttttcagcttaatttcataagctctccaagacagcttatcaaaacaacttataacttatacaaaa 7907869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 362 - 414
Target Start/End: Original strand, 10272449 - 10272501
Alignment:
Q  362 ttttcagcttattttcattaactctccaggatagattagaaaaacaacttata 414  Q
    |||||||||||||||||| ||||||||| ||| | |||  |||||||||||||    
T  10272449 ttttcagcttattttcataaactctccaagatggcttatgaaaacaacttata 10272501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 362 - 414
Target Start/End: Complemental strand, 34975416 - 34975364
Alignment:
Q  362 ttttcagcttattttcattaactctccaggatagattagaaaaacaacttata 414  Q
    |||||||||||||| ||||| ||||||||||||| |||  ||||||| |||||    
T  34975416 ttttcagcttatttccattagctctccaggatagcttacgaaaacaatttata 34975364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 362 - 426
Target Start/End: Complemental strand, 36318826 - 36318762
Alignment:
Q  362 ttttcagcttattttcattaactctccaggatagattagaaaaacaacttataacatatacaaaa 426  Q
    |||||||||||||| ||| || |||||| ||||| |||  ||||||||||| ||| |||||||||    
T  36318826 ttttcagcttatttacataaattctccaagatagcttatgaaaacaacttaaaacttatacaaaa 36318762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 362 - 426
Target Start/End: Complemental strand, 36326063 - 36325999
Alignment:
Q  362 ttttcagcttattttcattaactctccaggatagattagaaaaacaacttataacatatacaaaa 426  Q
    |||||||||||||| ||| || |||||| ||||| |||  ||| ||||||||||| |||||||||    
T  36326063 ttttcagcttatttacataaattctccaagatagcttacgaaagcaacttataacttatacaaaa 36325999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 37; Significance: 0.00000000001; HSPs: 13)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 338 - 426
Target Start/End: Complemental strand, 1810740 - 1810653
Alignment:
Q  338 agcttattacatgtccataagcctttttcagcttattttcattaactctccaggatagattagaaaaacaacttataacatatacaaaa 426  Q
    ||||||| ||| ||| |||| | ||||||||||||||||||| |||||| || ||||| ||| ||||||||| |||||| |||||||||    
T  1810740 agcttatgacaggtcaataaacttttttcagcttattttcataaactcttcaagatagcttataaaaacaac-tataacttatacaaaa 1810653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 346 - 414
Target Start/End: Complemental strand, 39983410 - 39983342
Alignment:
Q  346 acatgtccataagcctttttcagcttattttcattaactctccaggatagattagaaaaacaacttata 414  Q
    ||||||| ||||||  ||||||| |||||||||||| ||||||||||||| |||  |||||||||||||    
T  39983410 acatgtctataagctattttcagtttattttcattagctctccaggatagcttatgaaaacaacttata 39983342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 329 - 399
Target Start/End: Complemental strand, 25790211 - 25790141
Alignment:
Q  329 tatggagacagcttattacatgtccataagcctttttcagcttattttcattaactctccaggatagatta 399  Q
    |||||| |||||||||||||||| | |||||  |||| | ||||||||||| | |||||||||||||||||    
T  25790211 tatggaaacagcttattacatgttcctaagctgttttgaacttattttcataagctctccaggatagatta 25790141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 322 - 395
Target Start/End: Complemental strand, 9478391 - 9478318
Alignment:
Q  322 gagagtttatggagacagcttattacatgtccataagcctttttcagcttattttcattaactctccaggatag 395  Q
    ||||||||||| | ||| ||||||||||||||||||||  |||||| |||| || ||| ||||||||| |||||    
T  9478391 gagagtttatgcaaacaacttattacatgtccataagctgttttcatcttacttccatcaactctccacgatag 9478318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 331 - 416
Target Start/End: Original strand, 10563545 - 10563630
Alignment:
Q  331 tggagacagcttattacatgtccataagcctttttcagcttattttcattaactctccaggatagattagaaaaacaacttataac 416  Q
    |||| ||||| ||| ||||||||||||||  |||||||||||||||| | | |||| ||| |||| |||  |||||||||||||||    
T  10563545 tggaaacagcctatgacatgtccataagctattttcagcttattttcttaagctcttcagcatagcttatgaaaacaacttataac 10563630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 261 - 414
Target Start/End: Complemental strand, 43985362 - 43985209
Alignment:
Q  261 cctatttcgattgacttgtttgagttcatctactgacataaacacttgtaattttagttacgagagtttatggagacagcttattacatgtccataagcc 360  Q
    ||||||| ||| ||||| ||| |||| ||||||||||||||||||||||||   |  ||  ||||| |||  || ||| ||||| ||||||||||||||     
T  43985362 cctatttggatcgacttatttaagtttatctactgacataaacacttgtaaaactgtttgagagagattactgaaacaacttatgacatgtccataagct 43985263  T
Q  361 tttttcagcttattttcattaactctccaggatagattagaaaaacaacttata 414  Q
    ||||||| ||| ||| ||| | |||| || | ||| ||| |||||||| |||||    
T  43985262 tttttcaacttgtttccataagctcttcacggtagcttacaaaaacaaattata 43985209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 363 - 422
Target Start/End: Complemental strand, 9478003 - 9477944
Alignment:
Q  363 tttcagcttattttcattaactctccaggatagattagaaaaacaacttataacatatac 422  Q
    ||||| ||||||||||| | ||||||||||||| |||  ||||||||||||||| |||||    
T  9478003 tttcaacttattttcataacctctccaggatagcttatgaaaacaacttataacttatac 9477944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 362 - 413
Target Start/End: Original strand, 13630299 - 13630350
Alignment:
Q  362 ttttcagcttattttcattaactctccaggatagattagaaaaacaacttat 413  Q
    |||||| |||||| |||| ||||||| |||||||||||| ||||||||||||    
T  13630299 ttttcaacttattgtcataaactctcaaggatagattaggaaaacaacttat 13630350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 353 - 418
Target Start/End: Complemental strand, 12289858 - 12289793
Alignment:
Q  353 cataagcctttttcagcttattttcattaactctccaggatagattagaaaaacaacttataacat 418  Q
    ||||||| ||||||| ||||||||||| |  ||||||  ||| |||| ||||||||||||||||||    
T  12289858 cataagcttttttcaacttattttcataagttctccaatataaattataaaaacaacttataacat 12289793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 333 - 414
Target Start/End: Complemental strand, 33942231 - 33942150
Alignment:
Q  333 gagacagcttattacatgtccataagcctttttcagcttattttcattaactctccaggatagattagaaaaacaacttata 414  Q
    |||||| ||||| |||||| |||||||  ||||||||| |||||||||| ||||| | ||| | |||  |||||||||||||    
T  33942231 gagacaacttatgacatgttcataagctgttttcagctaattttcattagctctctatgatggcttatgaaaacaacttata 33942150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 353 - 426
Target Start/End: Complemental strand, 41851596 - 41851523
Alignment:
Q  353 cataagcctttttcagcttattttcattaactctccaggatagattagaaaaacaacttataacatatacaaaa 426  Q
    ||||||| ||| |||||||| |||||| || |||||| ||||| ||   ||||||||||||| |||||||||||    
T  41851596 cataagcttttctcagcttaatttcataaattctccaagatagcttctgaaaacaacttatagcatatacaaaa 41851523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 459 - 487
Target Start/End: Original strand, 15866811 - 15866839
Alignment:
Q  459 ataagcacttaattaaaatgtttatccaa 487  Q
    |||||||||||||||||||||||||||||    
T  15866811 ataagcacttaattaaaatgtttatccaa 15866839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 322 - 394
Target Start/End: Original strand, 41042000 - 41042072
Alignment:
Q  322 gagagtttatggagacagcttattacatgtccataagcctttttcagcttattttcattaactctccaggata 394  Q
    |||| ||||| || ||| |||||||||||||||| |||  |||||| ||||||| ||| ||||||||| ||||    
T  41042000 gagaatttatagaaacaacttattacatgtccatcagctgttttcaacttatttccataaactctccaagata 41042072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 34; Significance: 0.0000000007; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 361 - 426
Target Start/End: Complemental strand, 33231780 - 33231716
Alignment:
Q  361 tttttcagcttattttcattaactctccaggatagattagaaaaacaacttataacatatacaaaa 426  Q
    |||| ||||||||||||||||  |||||| ||||||||| ||||||||||| || |||||||||||    
T  33231780 ttttccagcttattttcattagttctccaagatagattacaaaaacaactt-taccatatacaaaa 33231716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 262 - 311
Target Start/End: Original strand, 41848634 - 41848683
Alignment:
Q  262 ctatttcgattgacttgtttgagttcatctactgacataaacacttgtaa 311  Q
    |||||| ||||||||| |||||||| ||||||| ||||||||||||||||    
T  41848634 ctatttagattgacttatttgagtttatctactaacataaacacttgtaa 41848683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 323 - 395
Target Start/End: Original strand, 27290880 - 27290952
Alignment:
Q  323 agagtttatggagacagcttattacatgtccataagcctttttcagcttattttcattaactctccaggatag 395  Q
    |||| ||||| | ||||||||| ||||| ||||||||  |||||||||||||| ||| |||||| ||||||||    
T  27290880 agagcttatgaaaacagcttatgacatgcccataagctgttttcagcttatttccatgaactctgcaggatag 27290952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 356 - 427
Target Start/End: Complemental strand, 30443951 - 30443880
Alignment:
Q  356 aagcctttttcagcttattttcattaactctccaggatagattagaaaaacaacttataacatatacaaaag 427  Q
    |||| ||||||||||||||||||| |  ||||||  |||| ||| ||||||| |||||| ||||||||||||    
T  30443951 aagcttttttcagcttattttcataagttctccaatatagtttataaaaacagcttatagcatatacaaaag 30443880  T

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Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 259 - 309
Target Start/End: Complemental strand, 22667558 - 22667508
Alignment:
Q  259 ggcctatttcgattgacttgtttgagttcatctactgacataaacacttgt 309  Q
    ||||||||||||||| ||| |||||| | |||||||||||||| |||||||    
T  22667558 ggcctatttcgattggcttatttgagcttatctactgacataagcacttgt 22667508  T

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Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 259 - 309
Target Start/End: Complemental strand, 22724197 - 22724147
Alignment:
Q  259 ggcctatttcgattgacttgtttgagttcatctactgacataaacacttgt 309  Q
    ||||||||||||||| ||| |||||| | |||||||||||||| |||||||    
T  22724197 ggcctatttcgattggcttatttgagcttatctactgacataagcacttgt 22724147  T

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Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 329 - 395
Target Start/End: Original strand, 30923883 - 30923949
Alignment:
Q  329 tatggagacagcttattacatgtccataagcctttttcagcttattttcattaactctccaggatag 395  Q
    |||||| ||||||||| ||||||| ||||||  ||||||||||||||  || ||||||| |||||||    
T  30923883 tatggaaacagcttatgacatgtctataagctgttttcagcttatttctataaactctctaggatag 30923949  T

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Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 262 - 311
Target Start/End: Original strand, 31337330 - 31337379
Alignment:
Q  262 ctatttcgattgacttgtttgagttcatctactgacataaacacttgtaa 311  Q
    |||||| |||||  ||||||||||| |||||||||||||| |||||||||    
T  31337330 ctatttggattggtttgtttgagtttatctactgacataagcacttgtaa 31337379  T

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Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 362 - 426
Target Start/End: Complemental strand, 1816635 - 1816571
Alignment:
Q  362 ttttcagcttattttcattaactctccaggatagattagaaaaacaacttataacatatacaaaa 426  Q
    ||||||||||||||| || | |||||||| |||| |||  ||||||||||||| | |||||||||    
T  1816635 ttttcagcttattttgataagctctccagtatagcttatgaaaacaacttatatcttatacaaaa 1816571  T

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Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 326 - 414
Target Start/End: Original strand, 9279308 - 9279396
Alignment:
Q  326 gtttatggagacagcttattacatgtccataagcctttttcagcttattttcattaactctccaggatagattagaaaaacaacttata 414  Q
    ||||||||| ||||||||| ||||||  ||||||  |||||||||||||| | | |||||| || ||||| |||  |||||||| ||||    
T  9279308 gtttatggaaacagcttataacatgtatataagctgttttcagcttatttccttaaactcttcatgatagtttatgaaaacaacatata 9279396  T

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Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 354 - 426
Target Start/End: Complemental strand, 47132391 - 47132319
Alignment:
Q  354 ataagcctttttcagcttattttcattaactctccaggatagattagaaaaacaacttataacatatacaaaa 426  Q
    |||||| ||||||| ||||||||||| |  ||||||  |||| ||| ||||||||| |||| |||||||||||    
T  47132391 ataagcttttttcaacttattttcataacttctccaatatagcttataaaaacaacctatagcatatacaaaa 47132319  T

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Target: scaffold0003 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 328 - 411
Target Start/End: Complemental strand, 306412 - 306329
Alignment:
Q  328 ttatggagacagcttattacatgtccataagcctttttcagcttattttcattaactctccaggatagattagaaaaacaactt 411  Q
    ||||||| ||||||||| ||||| ||||||||  ||||||||||| || ||| | ||||| ||||||| |||  ||||||||||    
T  306412 ttatggaaacagcttatgacatgcccataagctgttttcagcttacttacataagctctctaggatagcttatgaaaacaactt 306329  T

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Target: scaffold0141 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: scaffold0141
Description:

Target: scaffold0141; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 255 - 309
Target Start/End: Original strand, 9689 - 9743
Alignment:
Q  255 tataggcctatttcgattgacttgtttgagttcatctactgacataaacacttgt 309  Q
    ||||||||||||| |||||| || |||||||| ||||||| ||||||| ||||||    
T  9689 tataggcctatttagattgatttatttgagtttatctactaacataaatacttgt 9743  T

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