View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2676_high_1 (Length: 559)
Name: NF2676_high_1
Description: NF2676
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2676_high_1 |
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Alignment Details
Target: chr2 (Bit Score: 152; Significance: 3e-80; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 152; E-Value: 3e-80
Query Start/End: Original strand, 346 - 540
Target Start/End: Complemental strand, 5569512 - 5569317
Alignment:
| Q |
346 |
caatacaccgcccgtctacaccaacattatcgagtttggtgcgtgagtctaaattgtaggtgacacaaatattatttaataccatattatatttttatac |
445 |
Q |
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| T |
5569512 |
caatataccgtccgtctacaccaacattatccagtttgatgtgtgaatctaaattgtaggtgacacaaatattatttaataccatattatatttttatac |
5569413 |
T |
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| Q |
446 |
taagtcacatccatccttacaaaattgtctttt-agtgatgattgtgactctttttatgttcactgcagactctatctttattctatatttgacca |
540 |
Q |
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| T |
5569412 |
tgagtcacacccattcttacaaaattgtcttttaagtgatgattgtgactctttttatgttcactgcagactctatctttattctatatttgacca |
5569317 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 16 - 159
Target Start/End: Complemental strand, 5569828 - 5569695
Alignment:
| Q |
16 |
ccaaccactgcaaaagctaattacaacccgtatggcgtcgactttcaagaaggcccaaccggaagagttaccaatggggcaacggaaattgacataattg |
115 |
Q |
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| T |
5569828 |
ccaaccactgcaaaagctaattacaacccgtatggcgtc----------aaggcccaaccggaagatttaccaatggggcaacggaaattgacataattg |
5569739 |
T |
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| Q |
116 |
gtaacaattataggcaccattacaagctcatttgttaattattg |
159 |
Q |
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| T |
5569738 |
gtaacaattataggcaccattacaagctcatttgttaattattg |
5569695 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 18 - 92
Target Start/End: Complemental strand, 5616006 - 5615932
Alignment:
| Q |
18 |
aaccactgcaaaagctaattacaacccgtatggcgtcgactttcaagaaggcccaaccggaagagttaccaatgg |
92 |
Q |
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| T |
5616006 |
aaccaatgcaaaatctaattacaatccgtacggcgtcgactttcaagaaggtccgacgggaagatttaccaatgg |
5615932 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 226 - 278
Target Start/End: Complemental strand, 5569628 - 5569575
Alignment:
| Q |
226 |
attatattggatctaactcattcttat-aaaacaagtatgaaagataagcaatg |
278 |
Q |
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| T |
5569628 |
attatattggatctaactcattcttataaaaataagtatgaaaaataagcaatg |
5569575 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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