View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2676_high_3 (Length: 447)
Name: NF2676_high_3
Description: NF2676
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2676_high_3 |
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| [»] scaffold0405 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 230; Significance: 1e-127; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 15 - 272
Target Start/End: Complemental strand, 9696162 - 9695905
Alignment:
| Q |
15 |
atcaaaagaatgtaccataacaaactaagtctgtattaataataaaggtgggatttaagtacagatcatgaagctgaatctacacttaaactatgcgcta |
114 |
Q |
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| T |
9696162 |
atcaacagaatgtaccataacaaactgagtctgtattaataataaaggtgggatttaagtacagatcatgaagctgaatctacacttaaactatgcgcta |
9696063 |
T |
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| Q |
115 |
atataaacctaaaaactgtttgttcatcaaaaaacagctttggatctaaaaagtttcccaattacattccaacctataataatgaaaattattctattgc |
214 |
Q |
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| T |
9696062 |
atataaacctaacaactgtttgttcatcgcaaaacagctttggatctaaaaagtttcccaattacattccaacctataataatgaaaattattctattgc |
9695963 |
T |
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| Q |
215 |
agttactcctacgcttcttccttcagcaccaccaactttactcctcatcctcctcctg |
272 |
Q |
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| T |
9695962 |
agttaatcctacgcttcttccttcagcaccaccaaccttactcctcatcctcctcctg |
9695905 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 386 - 435
Target Start/End: Complemental strand, 9695791 - 9695742
Alignment:
| Q |
386 |
cttcagacttggacttctcagatccttcttcctccgaagcattcttctca |
435 |
Q |
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| T |
9695791 |
cttcagacttggacttctcagatccttcttcctccgaagcattcttctca |
9695742 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0405 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: scaffold0405
Description:
Target: scaffold0405; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 387 - 435
Target Start/End: Original strand, 14700 - 14748
Alignment:
| Q |
387 |
ttcagacttggacttctcagatccttcttcctccgaagcattcttctca |
435 |
Q |
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| T |
14700 |
ttcagacttagacttatgagatccttcttcttccgaagcattcttctca |
14748 |
T |
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