View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2676_high_5 (Length: 285)
Name: NF2676_high_5
Description: NF2676
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2676_high_5 |
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Alignment Details
Target: chr6 (Bit Score: 253; Significance: 1e-141; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 253; E-Value: 1e-141
Query Start/End: Original strand, 1 - 269
Target Start/End: Complemental strand, 6328916 - 6328648
Alignment:
| Q |
1 |
aacaacgtcaaagaaatcaaaaacatcaaaatttcttgtttttgaatggcaactcgtgtggtcccacaaaaaatcatcaagaatctccgtttcaaaacca |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6328916 |
aacaacgtcaaagaaatcaaaaacatcaaaatttcttgtttttgaatggcaactcgtgtggtcccacaaaaaatcatcaagaatctccgtttcaaaacca |
6328817 |
T |
|
| Q |
101 |
ccacaaaaccattaaactcctcccatccttcagccaccgccaccgtcgcttcccttctcgaaagagaacaaccttctccaccacaaccgtcacaccaaca |
200 |
Q |
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||||||||||||||||||||| ||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6328816 |
ccacaaaaccattaaactcctaccatccttcagccaccgccaccgtcgcctccattctcgaaagagaacaaccttctccaccacaaccgtcacaccaaca |
6328717 |
T |
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| Q |
201 |
accatcttatcttgacctaaacgacggtgagagattattctcagctgttccaacgtccatgctgataag |
269 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
6328716 |
accatcttatcttgacctaaacgacggtgagagattattctcagctgttccaacgtccacgctgataag |
6328648 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 26 - 269
Target Start/End: Complemental strand, 6351434 - 6351191
Alignment:
| Q |
26 |
tcaaaatttcttgtttttgaatggcaactcgtgtggtcccacaaaaaatcatcaagaatctccgtttcaaaaccaccacaaaaccattaaactcctccca |
125 |
Q |
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||||| ||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6351434 |
tcaaattttcttgttattgaatggcaactcgtgtggtcccacaaaagatcatcaagaatctccgtttcaaaaccaccacaaaaccattaaactcctccca |
6351335 |
T |
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| Q |
126 |
tccttcagccaccgccaccgtcgcttcccttctcgaaagagaacaaccttctccaccacaaccgtcacaccaacaaccatcttatcttgacctaaacgac |
225 |
Q |
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|||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6351334 |
tccttcggccaccgccgccgtcgcttcccttctcgaaagagaacaaccttctccaccacaaccgtcacaccaacaaccatcttatcttgacctaaacgac |
6351235 |
T |
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| Q |
226 |
ggtgagagattattctcagctgttccaacgtccatgctgataag |
269 |
Q |
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| T |
6351234 |
ggtgagagattattctcagctgttccaacgtccacgctgataag |
6351191 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 26 - 269
Target Start/End: Complemental strand, 6336449 - 6336206
Alignment:
| Q |
26 |
tcaaaatttcttgtttttgaatggcaactcgtgtggtcccacaaaaaatcatcaagaatctccgtttcaaaaccaccacaaaaccattaaactcctccca |
125 |
Q |
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||||| ||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6336449 |
tcaaattttcttgttattgaatggcaactcgtgtggtcccacaaaagatcatcaagaatctccgtttcaaaaccaccacaaaaccattaaactcctccca |
6336350 |
T |
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| Q |
126 |
tccttcagccaccgccaccgtcgcttcccttctcgaaagagaacaaccttctccaccacaaccgtcacaccaacaaccatcttatcttgacctaaacgac |
225 |
Q |
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|||||| ||||||||| |||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6336349 |
tccttcggccaccgccgccgtcgcttcccttattgaaagagaacaaccttctccaccacaaccgtcacaccaacaaccatcttatcttgacctaaacgac |
6336250 |
T |
|
| Q |
226 |
ggtgagagattattctcagctgttccaacgtccatgctgataag |
269 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
6336249 |
ggtgagagattattctcagctgttccaacgtccacgctgataag |
6336206 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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