View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2676_low_2 (Length: 458)
Name: NF2676_low_2
Description: NF2676
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2676_low_2 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 254; Significance: 1e-141; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 1 - 306
Target Start/End: Complemental strand, 46365258 - 46364954
Alignment:
| Q |
1 |
ctacataattaatgatttgccggaaagacattgaaccagtgtgattttgcaaagctagagacgcaccgtgaaaatccgcttgataccaaacatacatcat |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46365258 |
ctacataattaatgatttgccggaaagacattgaaccagtgtgattttgcaaagctagagacgcaccgtgaaaatccgcttgataccaaacatacatcat |
46365159 |
T |
|
| Q |
101 |
gcactttgttattcatcttattagatttaattatttttcttagtttgtacaaagtcgtgtgacttgaagaggaatggagaaaatggcagcaagacatttt |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46365158 |
gcactttgttattcatcttattagatttaattatttttctt--------caaagtcgtgtgacttgaagaggaatggagaaaatggcagcaagacatttt |
46365067 |
T |
|
| Q |
201 |
acattaactgcagacttgttgttcctctctggggaatccaatgtgacagtgctagaatgccgtctttttcaat-------atttcaaatttctattcttt |
293 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
46365066 |
acattaactgcagacttgttgttcctctctggggaatccaatgtgacaatgctagaatgccgtctttttcaatatttcaaatttcaaatttctattcttt |
46364967 |
T |
|
| Q |
294 |
gcattaagtataa |
306 |
Q |
| |
|
||||||||||||| |
|
|
| T |
46364966 |
gcattaagtataa |
46364954 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 302 - 445
Target Start/End: Complemental strand, 46364566 - 46364422
Alignment:
| Q |
302 |
tataatggatgaccatattaacaaatgcacctgaggttggagtaaaacaagttgccgctcattggatatgttttataagttggagtaattaacac-nnnn |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46364566 |
tataatggatgaccatattaacaaatgcacatgaggttggagtaaaacaagttgccgctcattggatatgttttataagttggagtaattaacacttttt |
46364467 |
T |
|
| Q |
401 |
nnnaaccctcggattctcgctgatagagtcaaaagtgttgaccct |
445 |
Q |
| |
|
||||||||||||||| |||| ||||||||||||||| ||||| |
|
|
| T |
46364466 |
tttaaccctcggattctcactgacagagtcaaaagtgttaaccct |
46364422 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University