View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2676_low_5 (Length: 440)
Name: NF2676_low_5
Description: NF2676
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2676_low_5 |
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Alignment Details
Target: chr1 (Bit Score: 351; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 351; E-Value: 0
Query Start/End: Original strand, 12 - 425
Target Start/End: Complemental strand, 36738539 - 36738126
Alignment:
| Q |
12 |
atgaagagcagcatggaataaaaattatttttgttgtacnnnnnnnnnnnnngaagaattttgttgtacattaataaagtcaattgtacctaacttctga |
111 |
Q |
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| T |
36738539 |
atgaagagcagcatggaataaaaattatttttgttgtacttttttcttttt-gaagaattttgttgtacattaataaagtcaattgtacctaacttctga |
36738441 |
T |
|
| Q |
112 |
tttagtctaatagtaaaaagataaattttgaatgtaagttattttcattaaagaaaaagagacaaactttacctcaagtgatttgcttagatagaaagca |
211 |
Q |
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| T |
36738440 |
tttagtctaatagtaaaaagataaattttgaatgtaagttattttcattaaagaaaaagagacaaactttacctcaagtgatttgcttagatagaaagca |
36738341 |
T |
|
| Q |
212 |
ttatcccacacccaaaaaatgaaataactccccaatatttttgtttgtattttaaggtaaagatgggttctccttttaaacacaagtttaggtcactctc |
311 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36738340 |
ttatcccacacccaaaaaatgaaataactccccaatatttttgtttgtattttaaggtaaagatgggttctccttttaaacacaagtttaggtcactctc |
36738241 |
T |
|
| Q |
312 |
tagtctatttagtacaaaatatatgtttctctctatgttcttaatcattttatggcatcgtaacctaatgtttgagctctcaca-ttttgttgggctaac |
410 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||| ||||||| |
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| T |
36738240 |
tagtctatttagtacaaaatatatgtttctctctatgttcttaatcattttatggcatcgtatcctaatgtttgagctctcacatttttgttaggctaac |
36738141 |
T |
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| Q |
411 |
actaatttagttatt |
425 |
Q |
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|||||||| |||||| |
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| T |
36738140 |
actaatttggttatt |
36738126 |
T |
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