View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2676_low_6 (Length: 296)
Name: NF2676_low_6
Description: NF2676
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2676_low_6 |
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Alignment Details
Target: chr5 (Bit Score: 262; Significance: 1e-146; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 1 - 278
Target Start/End: Complemental strand, 3803268 - 3802991
Alignment:
| Q |
1 |
cacgtcgaggaggaggaacatgaacaaaattgagaacgcgcttttgcaaaacccaatcagcatcaatgaaatggccagttagcatcatgtattctatctt |
100 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
3803268 |
cacgtcgaggaggaggaacatgaacaaaactgagaacgcgcttttgcaaaacccaatcagcatcaatgaaatggccagttagcaccatgtattctatctt |
3803169 |
T |
|
| Q |
101 |
ttgattttgcgacttccataaatcagtggtcaagcaaatcttattaattgtcctcaaagttgactttaacttcttcctttcagattcatagatagcaaca |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
3803168 |
ttgattttgcgacttccataaatcagtggtcaagcaaatcttattaattgtcctcaaagttgactttaacttcttcctttcagattcatagacagcaaca |
3803069 |
T |
|
| Q |
201 |
caatcattcttcaatgtttttcgactaattttctcatatgaaaaattagaacatttcatcatgaaaagaaaaccttct |
278 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
3803068 |
caatcattcttcaatgtttttcgactaattttctcatatgagaaattagaacatttcatcatgaaaagaaaaccttct |
3802991 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 250; Significance: 1e-139; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 1 - 278
Target Start/End: Original strand, 7958346 - 7958623
Alignment:
| Q |
1 |
cacgtcgaggaggaggaacatgaacaaaattgagaacgcgcttttgcaaaacccaatcagcatcaatgaaatggccagttagcatcatgtattctatctt |
100 |
Q |
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||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||| |
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| T |
7958346 |
cacgtcgaggaggaggaacatgaacaaaacttagaacgcgcttttgcaaaacccaatcagcatcaatgaaatggtcagttagcaccatgtattctatctt |
7958445 |
T |
|
| Q |
101 |
ttgattttgcgacttccataaatcagtggtcaagcaaatcttattaattgtcctcaaagttgactttaacttcttcctttcagattcatagatagcaaca |
200 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
7958446 |
ttgattttgcgacttctataaatcagtggtcaagcaaatcttattaattgtcctcaaagttgactttaacttcttcctttcagattcatagacagcaaca |
7958545 |
T |
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| Q |
201 |
caatcattcttcaatgtttttcgactaattttctcatatgaaaaattagaacatttcatcatgaaaagaaaaccttct |
278 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
7958546 |
caatcattcttcaatgtttttcgactaattttctcatatgataaattagaacatttcatcatgaaaagaaaaccttct |
7958623 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 235; Significance: 1e-130; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 4 - 278
Target Start/End: Original strand, 7446284 - 7446558
Alignment:
| Q |
4 |
gtcgaggaggaggaacatgaacaaaattgagaacgcgcttttgcaaaacccaatcagcatcaatgaaatggccagttagcatcatgtattctatcttttg |
103 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
7446284 |
gtcgaggaggaggaacatgaacaaaaccgagaacgcgcttttgcaaaacccaatcagcatcaatgaaatggccagttagcaccatgtattctatcttttg |
7446383 |
T |
|
| Q |
104 |
attttgcgacttccataaatcagtggtcaagcaaatcttattaattgtcctcaaagttgactttaacttcttcctttcagattcatagatagcaacacaa |
203 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||| |||||||||||||||||||||| ||||||||| |
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| T |
7446384 |
attttgtgacttccataaatcagtggtcaagcaaatcttattaactatcctcaaagttgactttaatttcttcctttcagattcatagacagcaacacac |
7446483 |
T |
|
| Q |
204 |
tcattcttcaatgtttttcgactaattttctcatatgaaaaattagaacatttcatcatgaaaagaaaaccttct |
278 |
Q |
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|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7446484 |
tcattcttcaatgtttttcgactaatttcctcatatgaaaaattagaacatttcatcatgaaaagaaaaccttct |
7446558 |
T |
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