View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2677_high_14 (Length: 206)
Name: NF2677_high_14
Description: NF2677
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2677_high_14 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 162; Significance: 1e-86; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 20 - 188
Target Start/End: Complemental strand, 36186884 - 36186715
Alignment:
| Q |
20 |
attacacatttttggaatgtttgaagtttagcaactacaagtatgtaacgaatcttccatagccccaccttatgttgtttaattaagaaaacaatcacgc |
119 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36186884 |
attacacatttttggaatgtttgaagtttagcaactacaagtatgtaacgaatcttccatagccccaccttatgttgtttaattaagaaaacaatcacgc |
36186785 |
T |
|
| Q |
120 |
tattttgtgcacttaagtagttaagcctaactattaactaataccatttacta-tattgagagtgtaatg |
188 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
36186784 |
tattttgtgcacttaagtagttaagcctaactattaactaataccatttactattattgagagtgtaatg |
36186715 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University