View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2677_high_2 (Length: 515)
Name: NF2677_high_2
Description: NF2677
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2677_high_2 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 436; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 436; E-Value: 0
Query Start/End: Original strand, 17 - 515
Target Start/End: Original strand, 25254638 - 25255137
Alignment:
| Q |
17 |
caaaggagtaaaacaccgatggccatccatactgatgaattaggaaaggtgaaaaggccaatccagtgaccgatccaaggtacatgccactgtataccag |
116 |
Q |
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| T |
25254638 |
caaaggagtaaaacaccgatggccatccatactgatgaattaggaaaggtgaaaaggccaatccagtgaccgatccaaggtacatgccactgtataccag |
25254737 |
T |
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| Q |
117 |
agctaatgatctacttctctctgctacaggaacccattttgacagaatattattcatggccggcatagcaacaccctagtaagatccaaaagaagttagc |
216 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25254738 |
agctaatgatctacttctctctgccacaggaacccattttgacagaatattattcatggccggcatagcaacaccctagtaagatccaaaagaagttagc |
25254837 |
T |
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| Q |
217 |
ttcacatggacaagaaa-ctaccatcatattgtatcatcaccaaccatctgaatcaaatcattactaatatcactgacaatatcgggtgcaacaaagaac |
315 |
Q |
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| T |
25254838 |
ttcacatggaaaaaaaagctaccatcatatcgtatcatcaccaactatatgaatcaaatcattactaatatcagtgacagcatagggtgcaacaaagaac |
25254937 |
T |
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| Q |
316 |
attttaacagaacgcacctcaccaattcccatgaatgcacgggcaactaatagaaaaggcaatccaagtttggcagctacgggagttaggattgtggcaa |
415 |
Q |
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| T |
25254938 |
attttaacagaacacacctcaccaattcccatgaatgcacgggcaactaatagaaaaggcagtccaagtttggcagctacgggagttaggattgtggcaa |
25255037 |
T |
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| Q |
416 |
cggaccaccaaatgacgccaaatgctaaaacttgcttccctcccactgtgtcagcccatattccaccagcaatctgcaacaagtatctacggatgcatca |
515 |
Q |
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| T |
25255038 |
cggaccaccaaatgacgccaaatgctaaaacttgcttccctcccaccgtgtcagcccatattccaccagcaatctgcaacaagtatctacagatgcatca |
25255137 |
T |
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Target: chr8 (Bit Score: 53; Significance: 3e-21; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 17 - 193
Target Start/End: Original strand, 11319737 - 11319913
Alignment:
| Q |
17 |
caaaggagtaaaacaccgatggccatccatactgatgaattaggaaaggtgaaaaggccaatccagtgaccgatccaaggtacatgccactgtataccag |
116 |
Q |
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|||| ||||| ||||| |||||||||||| | | || ||||||||||| || || |||| || ||||| || ||||||||||||||||| ||||| || |
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| T |
11319737 |
caaatgagtagaacacagatggccatccaaatttttggattaggaaaggcgagaatcccaagcctgtgacagaaccaaggtacatgccactatatactag |
11319836 |
T |
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| Q |
117 |
agctaatgatctacttctctctgctacaggaacccattttgacagaatattattcatggccggcatagcaacaccct |
193 |
Q |
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| T |
11319837 |
tgcaagtgatctgcttctctccgatactggaatccacttggaaagaatattattcattgcaggcatagcaacaccct |
11319913 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 91 - 193
Target Start/End: Complemental strand, 29401940 - 29401838
Alignment:
| Q |
91 |
ccaaggtacatgccactgtataccagagctaatgatctacttctctctgctacaggaacccattttgacagaatattattcatggccggcatagcaacac |
190 |
Q |
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||||||||||||||||| ||||| || | | |||||| |||||||| | || |||| ||| || ||||| |||||||||||||| ||||| || |||| |
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| T |
29401940 |
ccaaggtacatgccactatatactagtgaaagtgatctgcttctctccgaaactggaatccacttggacagtatattattcatggcgggcatggctacac |
29401841 |
T |
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| Q |
191 |
cct |
193 |
Q |
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| T |
29401840 |
cct |
29401838 |
T |
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