View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2677_low_1 (Length: 571)
Name: NF2677_low_1
Description: NF2677
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2677_low_1 |
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Alignment Details
Target: chr4 (Bit Score: 394; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 394; E-Value: 0
Query Start/End: Original strand, 1 - 553
Target Start/End: Original strand, 24508174 - 24508714
Alignment:
| Q |
1 |
attttgagatagaaagagtgtctagatgatataacggtcaaaggtcgcttttataagcaagtatttatattattattttttgtaatnnnnnnntattatt |
100 |
Q |
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| T |
24508174 |
attttgagatagaaagagtgtctagctgatataacggtcaaaggtcgcttttataagcaagtatttatattattattttttgtaataaaaaaatattatt |
24508273 |
T |
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| Q |
101 |
tatttcaatagtaaagtgttatcaatatcataatataaaagctatgaaaacttgaccnnnnnnnngtcatgaaaaaagtcagactttatttttaaataaa |
200 |
Q |
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| T |
24508274 |
tatttcaataataaagtgttataaatatcataatataaaagctatgaaaacttgatcaaaaaaaagtcatgaaaaaagtcagactttatttttaaataaa |
24508373 |
T |
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| Q |
201 |
tttgtctgttctttaagtnnnnnnnngactcttatatgtacaattatttttcaattttaattcaaattaaaaaatataccacattgataaaaacagtatt |
300 |
Q |
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| T |
24508374 |
tttatctgttctttaagtaaaaaa--gactcttatatgtacaattatttttcaattttaattcaaattaaaaaatataccacattgataaaaacagtatt |
24508471 |
T |
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| Q |
301 |
ttattgaatttttatttttgttcaactttaaaaacgactttt-atgtcagtctttattacataaaatgcctcaatttattgttcgctttaggcctaataa |
399 |
Q |
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| T |
24508472 |
ttatt-----------tttgttcaactttaaaagcgactttttatgttagtctttattacataaaatgcctcaatttattgttcgctttaggcctagtaa |
24508560 |
T |
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| Q |
400 |
tatgttgtgtcgactctctcaaagtgccacatagtgatgtggttctttaaaagcacggctacatacgaagaatccaagagcatgaccaagtgcaacaacc |
499 |
Q |
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| T |
24508561 |
tatgttgtgtcgactctctcaaagtgccacatagtgatgtggttctttaaaagcacggctacatacgaagaatccaagagcatgaccaagtacaacaacc |
24508660 |
T |
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| Q |
500 |
aagaacactccaccgttgaaagacatgagtgccaacatgatcaaataagccaat |
553 |
Q |
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| T |
24508661 |
aagaacactccaccattgaaagacatgagtgccaacatgatcaaataagccaat |
24508714 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 434 - 549
Target Start/End: Original strand, 24510995 - 24511110
Alignment:
| Q |
434 |
tgatgtggttctttaaaagcacggctacatacgaagaatccaagagcatgaccaagtgcaacaaccaagaacactccaccgttgaaagacatgagtgcca |
533 |
Q |
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| T |
24510995 |
tgatgtggttttttgaaagcacggctacgaaagaagaacccaacagcatgaccaagcacagcaaccaagaacactccaccattgaaagacatgagagcca |
24511094 |
T |
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| Q |
534 |
acatgatcaaataagc |
549 |
Q |
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| T |
24511095 |
acataaccaaataagc |
24511110 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 447 - 549
Target Start/End: Original strand, 24295735 - 24295837
Alignment:
| Q |
447 |
taaaagcacggctacatacgaagaatccaagagcatgaccaagtgcaacaaccaagaacactccaccgttgaaagacatgagtgccaacatgatcaaata |
546 |
Q |
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||||||||| |||||||| |||||||||||||||||||||||| || ||||||| ||||| ||||| ||||||||||| || |||||||| | |||||| |
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| T |
24295735 |
taaaagcactgctacataagaagaatccaagagcatgaccaagcacagcaaccaaaaacacaccaccattgaaagacataagagccaacataaccaaata |
24295834 |
T |
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| Q |
547 |
agc |
549 |
Q |
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||| |
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| T |
24295835 |
agc |
24295837 |
T |
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