View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2677_low_11 (Length: 236)
Name: NF2677_low_11
Description: NF2677
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2677_low_11 |
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Alignment Details
Target: chr2 (Bit Score: 136; Significance: 4e-71; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 136; E-Value: 4e-71
Query Start/End: Original strand, 16 - 151
Target Start/End: Original strand, 33297044 - 33297179
Alignment:
| Q |
16 |
agaatagcatgctttgctacattaaaatattatatgattgggtctcaggttcaagttgttatctattgttgtcttcttgtggtaatgtactttcttttct |
115 |
Q |
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| T |
33297044 |
agaatagcatgctttgctacattaaaatattatatgattgggtctcaggttcaagttgttatctattgttgtcttcttgtggtaatgtactttcttttct |
33297143 |
T |
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| Q |
116 |
tctttagtattgttttttctcttagagttaaaagct |
151 |
Q |
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| T |
33297144 |
tctttagtattgttttttctcttagagttaaaagct |
33297179 |
T |
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Target: chr2; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 179 - 236
Target Start/End: Original strand, 33297218 - 33297275
Alignment:
| Q |
179 |
actaatgaaagtaaccactaatataaagttcttctgcttagtatcaccacttaaagta |
236 |
Q |
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| T |
33297218 |
actaatgaaagtaaccactaatataaagttcttctgcttagtatcaccacttaaagta |
33297275 |
T |
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