View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2677_low_15 (Length: 202)
Name: NF2677_low_15
Description: NF2677
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2677_low_15 |
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| [»] chr6 (3 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 152; Significance: 1e-80; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 19 - 202
Target Start/End: Complemental strand, 32590826 - 32590643
Alignment:
| Q |
19 |
catacgttgtgtaaatcaggtacccaccaatgagtgaagccttattaaaatctggaaggccaatcttcttctctatgtgtgaatggtgagttgaattaga |
118 |
Q |
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| T |
32590826 |
catacgttgtgtaaatcaggtatccaccaatgagtgaagccttattaaaatctggaaggccaatcttcttctctgtgtgtgaatggtgagttgaattagt |
32590727 |
T |
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| Q |
119 |
gataatgtttctcatacataattgatatttcattttatatttcattctaatttcttttttgaaacataggggaaaggaagatcc |
202 |
Q |
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| T |
32590726 |
gataatgtttctcatacataattgatatttcattttctattttattatacttgcttttttgaaacataggggaaaggaagatcc |
32590643 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 19 - 202
Target Start/End: Complemental strand, 32601297 - 32601114
Alignment:
| Q |
19 |
catacgttgtgtaaatcaggtacccaccaatgagtgaagccttattaaaatctggaaggccaatcttcttctctatgtgtgaatggtgagttgaattaga |
118 |
Q |
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| T |
32601297 |
catacgttgtgtaaatcaggtatccaccaatgagtgaagccttattaaaatctggaaggccaatcttcttctctatgtgtgaatggtgagctggattggt |
32601198 |
T |
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| Q |
119 |
gataatgtttctcatacataattgatatttcattttatatttcattctaatttcttttttgaaacataggggaaaggaagatcc |
202 |
Q |
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| T |
32601197 |
gataatgtttctcatacataattgatatttcattttatatttcattataatttcttttttgaaacataggggatgggaagatcc |
32601114 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 36 - 109
Target Start/End: Original strand, 24883186 - 24883259
Alignment:
| Q |
36 |
aggtacccaccaatgagtgaagccttattaaaatctggaaggccaatcttcttctctatgtgtgaatggtgagt |
109 |
Q |
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| T |
24883186 |
aggtacccacgaatgggtgaagctttagtacaatctggaaggccaatcttctactctttgtgtgaatggtgagt |
24883259 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 70; Significance: 9e-32; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 70; E-Value: 9e-32
Query Start/End: Original strand, 28 - 113
Target Start/End: Complemental strand, 35124329 - 35124244
Alignment:
| Q |
28 |
tgtaaatcaggtacccaccaatgagtgaagccttattaaaatctggaaggccaatcttcttctctatgtgtgaatggtgagttgaa |
113 |
Q |
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| T |
35124329 |
tgtaaattaggtacccaccaatgagtgaagccttgttaaactctggaagaccaatcttcttctctatgtgtgaatggtgagttgaa |
35124244 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 65; E-Value: 9e-29
Query Start/End: Original strand, 31 - 115
Target Start/End: Complemental strand, 34578633 - 34578549
Alignment:
| Q |
31 |
aaatcaggtacccaccaatgagtgaagccttattaaaatctggaaggccaatcttcttctctatgtgtgaatggtgagttgaatt |
115 |
Q |
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| T |
34578633 |
aaattaggtatccaccaatgagtgaagctttattaaactccggaaggccaatcttcttctctatgtgtgaatggtgagttgaatt |
34578549 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 63; E-Value: 1e-27
Query Start/End: Original strand, 36 - 137
Target Start/End: Complemental strand, 34594332 - 34594230
Alignment:
| Q |
36 |
aggtacccaccaatgagtgaagccttattaaaatctggaaggccaatcttcttctctatgtgtgaatggtgagttg-aattagagataatgtttctcata |
134 |
Q |
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|||||||| |||||||||||||||||| | |||||||||||| ||||||||||||| ||||||||||||||||||| ||||| | || |||||||||||| |
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| T |
34594332 |
aggtacccgccaatgagtgaagccttaatgaaatctggaaggtcaatcttcttctcaatgtgtgaatggtgagttgaaattaaatatgatgtttctcata |
34594233 |
T |
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| Q |
135 |
cat |
137 |
Q |
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| T |
34594232 |
cat |
34594230 |
T |
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