View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2677_low_3 (Length: 431)
Name: NF2677_low_3
Description: NF2677
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2677_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 229; Significance: 1e-126; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 11 - 254
Target Start/End: Original strand, 25901415 - 25901661
Alignment:
| Q |
11 |
atgaaaacacatttttactacaaatgcgacaattaaaatgtaaccaagggagtagtaactaatgtacctctgagcaagaagcctgcattgtgaaatcatt |
110 |
Q |
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| T |
25901415 |
atgaaaacacatttttactacaaatgcgacaattaaaatgtaaccaagggagtagtaactaatgtacctctgagcaagaagcctgcattgtgaaatcatt |
25901514 |
T |
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| Q |
111 |
gaaacagctaataacacattgttgaatctcaaggccta---atgcttccaatgtgtttactgtggatatcaacaaccctggcttccgtgcacaacaaatt |
207 |
Q |
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| T |
25901515 |
gaaacagctaataacatattgttgaatctcaaggcctaatgatgcttccaatgtgtttactgtggatatcaacaaccctggcttccgtgcacaacaaatt |
25901614 |
T |
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| Q |
208 |
tcaacccttgtgtctgcactcctctccacctcaaactgcaaagtaac |
254 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25901615 |
tcaacccttgtgtctgcactcctctccacctcaaactgcaaagtaac |
25901661 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 291 - 415
Target Start/End: Original strand, 25901698 - 25901822
Alignment:
| Q |
291 |
gatgcaggattaattagggattttcaccnnnnnnncaataacaattggatccttcaacacagattaatttcaaaagggtacacttttttcttttcaattt |
390 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25901698 |
gatgcaggattaattagggattttcaccaaaaaaacaataacaattggatccttcaacacagattaatttcaaaagggtacacttttttcttttcaattt |
25901797 |
T |
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| Q |
391 |
acatagatatgttgacagtatgaga |
415 |
Q |
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| T |
25901798 |
acatagatatgttgacagtatgaga |
25901822 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 371 - 415
Target Start/End: Original strand, 1511522 - 1511566
Alignment:
| Q |
371 |
cacttttttcttttcaatttacatagatatgttgacagtatgaga |
415 |
Q |
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| T |
1511522 |
cacttttttcttttcattttacatagatatgttgacagtatgaga |
1511566 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 187; Significance: 1e-101; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 11 - 254
Target Start/End: Original strand, 52002433 - 52002680
Alignment:
| Q |
11 |
atgaaaacacatttttactacaaatgcgacaattaaaatgtaaccaagggagt----agtaactaatgtacctctgagcaagaagcctgcattgtgaaat |
106 |
Q |
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||||||||||||||||||||||| |||||| |||||| ||||| |||| | | ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52002433 |
atgaaaacacatttttactacaactgcgacgtttaaaaagtaactaaggaattagtaagtaactaatgtacctctgagcaagaagcctgcattgtgaaat |
52002532 |
T |
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| Q |
107 |
cattgaaacagctaataacacattgttgaatctcaaggcctaatgcttccaatgtgtttactgtggatatcaacaaccctggcttccgtgcacaacaaat |
206 |
Q |
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| T |
52002533 |
cattgaaacagctaataacacattgttgaatctcaaggcctaatgcttccaatgtgtttactgtggatagcaacaaccctggcttccctgcacaacaaat |
52002632 |
T |
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| Q |
207 |
ttcaacccttgtgtctgcactcctctccacctcaaactgcaaagtaac |
254 |
Q |
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||||||||||||||| || ||||||||||||||||||||||||||||| |
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| T |
52002633 |
ttcaacccttgtgtccgcgctcctctccacctcaaactgcaaagtaac |
52002680 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 333 - 369
Target Start/End: Original strand, 52002716 - 52002752
Alignment:
| Q |
333 |
aattggatccttcaacacagattaatttcaaaagggt |
369 |
Q |
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| T |
52002716 |
aattggatccttcaacacagattaatttcaaaagggt |
52002752 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 52; Significance: 1e-20; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 76 - 191
Target Start/End: Complemental strand, 29010180 - 29010065
Alignment:
| Q |
76 |
acctctgagcaagaagcctgcattgtgaaatcattgaaacagctaataacacattgttgaatctcaaggcctaatgcttccaatgtgtttactgtggata |
175 |
Q |
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|||||||||||||| || |||| || ||||||||||||| ||| |||||||| || ||||||||||||||||||||||| |||||||| ||||| || | |
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| T |
29010180 |
acctctgagcaagatgcttgcaatgaaaaatcattgaaactgcttataacacactggtgaatctcaaggcctaatgcttctaatgtgttcactgttgaca |
29010081 |
T |
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| Q |
176 |
tcaacaaccctggctt |
191 |
Q |
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||||| |||||||| |
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| T |
29010080 |
gtaacaatcctggctt |
29010065 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 52; Significance: 1e-20; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 76 - 191
Target Start/End: Original strand, 13148737 - 13148852
Alignment:
| Q |
76 |
acctctgagcaagaagcctgcattgtgaaatcattgaaacagctaataacacattgttgaatctcaaggcctaatgcttccaatgtgtttactgtggata |
175 |
Q |
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|||||||||||||| || |||| || ||||||||||||| ||| |||||||| || ||||||||||||||||||||||| |||||||| ||||| || | |
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| T |
13148737 |
acctctgagcaagatgcttgcaatgaaaaatcattgaaactgcttataacacactgatgaatctcaaggcctaatgcttctaatgtgttcactgttgaca |
13148836 |
T |
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| Q |
176 |
tcaacaaccctggctt |
191 |
Q |
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||||| |||||||| |
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| T |
13148837 |
gtaacaatcctggctt |
13148852 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 371 - 415
Target Start/End: Complemental strand, 2437707 - 2437665
Alignment:
| Q |
371 |
cacttttttcttttcaatttacatagatatgttgacagtatgaga |
415 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
2437707 |
cacttttttcttttcaatttacat--atatgttgacagtatgaga |
2437665 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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