View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2677_low_4 (Length: 398)
Name: NF2677_low_4
Description: NF2677
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2677_low_4 |
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Alignment Details
Target: chr1 (Bit Score: 204; Significance: 1e-111; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 155 - 382
Target Start/End: Original strand, 36952190 - 36952417
Alignment:
| Q |
155 |
cgcttaaccgtatatggatgcatgctactgtgaactgtcctctaaatcaagcttcttgttgtttggcatagcactaaaatgagttgtttctgattttgag |
254 |
Q |
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| T |
36952190 |
cgcttaaccgtatatggatgcatgctactgtgaactgtcctctaactcaagcttcttgttgtttggcatagcactaaaatgagttgtttctgattttgag |
36952289 |
T |
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| Q |
255 |
gctttccaacggctaatagaagatgatgaacttttgttttgtaagtggacatggttttttcctttcttttgtgaaccgagagtattctccgcatgcaatg |
354 |
Q |
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| T |
36952290 |
gctttccaacggctaatagaagatgatgaacttttgttttgtaagtggacatggttttttcctttcttttgtgaaccgagagtattctccgcatgcaact |
36952389 |
T |
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| Q |
355 |
caaatattaatctcttgagtcaggtagg |
382 |
Q |
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||||||||| |||||||||||||||| |
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| T |
36952390 |
gtaatattaatgtcttgagtcaggtagg |
36952417 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 1 - 104
Target Start/End: Original strand, 36952036 - 36952139
Alignment:
| Q |
1 |
aaagtataaagtttgcattgtgaactgtgctatgctaatgattacaaaattatcaatcaagtgaatgaaaatgagacgtaggaatcaaaatattgcagag |
100 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36952036 |
aaagtataaagtttgcattgtgaactgtgctatggtaatgattacaaaattatcaatcaagtgaatgaaaatgagacgtaggaatcaaaatattgcagag |
36952135 |
T |
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| Q |
101 |
tttt |
104 |
Q |
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|||| |
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| T |
36952136 |
tttt |
36952139 |
T |
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