View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2677_low_5 (Length: 393)
Name: NF2677_low_5
Description: NF2677
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2677_low_5 |
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Alignment Details
Target: chr5 (Bit Score: 245; Significance: 1e-136; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 13 - 378
Target Start/End: Original strand, 13148375 - 13148754
Alignment:
| Q |
13 |
aatatgttaaaagaagtaagaacatgttttattttaaccatgcaaacaattattgaggcaaatagtcnnnnnnnnnnggt-----ctggagtcacaaaaa |
107 |
Q |
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| T |
13148375 |
aatatgttaaaagaagtaagaacatgttttattttaaccatgcaaacaattattgaggcaaatagtcttttttttttgttttgttctgcagtcacaaaaa |
13148474 |
T |
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| Q |
108 |
ttgattctagaaaattgttacggactaaaattgaattgaatgtgataaattccagacgaaaatccaattgtagagaaaaaagccctaaattctaacttca |
207 |
Q |
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| T |
13148475 |
ttgattctagaaaattgttacggactaaaattgaattgaatgtgataaattccagacgaaaaatcaattgtagagaaaaaagccctaaattctaacttca |
13148574 |
T |
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| Q |
208 |
aattagaatcgaatttaaagacaaaaacaattcttctcgcaaacatccaaacttatacttaaagctcaaaagcgtagt----agtaaaatgacggtgaca |
303 |
Q |
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| T |
13148575 |
atttagaatcgattttgaagacaaaaacaattcttctcgcaaacatccaaacatatacttaaagctcaaaagcgtagtttttagtaaaatgatggtgaca |
13148674 |
T |
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| Q |
304 |
caatgtaattctgccaaattcgctatcaatctgaacatgcagtaat-----ataatttatgaacctctgagcaagatgct |
378 |
Q |
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| T |
13148675 |
caatgtaattctgccaaattcgctatcaatccgaacatgcagtaatataatataatttactaacctctgagcaagatgct |
13148754 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 57; Significance: 1e-23; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 261 - 378
Target Start/End: Complemental strand, 29010283 - 29010163
Alignment:
| Q |
261 |
tatacttaaagctcaaaagcgtagt----agtaaaatgacggtgacacaatgtaattctgccaaattcgctatcaatctgaacatgcagtaatataattt |
356 |
Q |
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| T |
29010283 |
tatacttaaagctcaatagcatagtttttagtaaaatgacagtgacacagtgtaattctgccaaattcgatatccatccgaacatgcagtaatacaa-tt |
29010185 |
T |
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| Q |
357 |
atgaacctctgagcaagatgct |
378 |
Q |
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| T |
29010184 |
actaacctctgagcaagatgct |
29010163 |
T |
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