View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2677_low_6 (Length: 379)
Name: NF2677_low_6
Description: NF2677
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2677_low_6 |
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Alignment Details
Target: chr4 (Bit Score: 325; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 325; E-Value: 0
Query Start/End: Original strand, 18 - 367
Target Start/End: Original strand, 43815139 - 43815488
Alignment:
| Q |
18 |
atatctgaatcaggactccctgaagttttgaacttagcagaagaagaaaatggatgatctagtagatttgtgtcgtcacctgagggtaaggaactagtgg |
117 |
Q |
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| T |
43815139 |
atatctgaatcaggactccctgaagttttgaacttagcagaagaagaaaatggatgatctagtagatttgtatcgtcacctgagggtaaggaactagtgg |
43815238 |
T |
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| Q |
118 |
tgctatggaaagatgatcttgtacttgcaagaccatttgacatattcctcaaatggttgttgagcaatggttgttgttttggggtgggaattttgtagtc |
217 |
Q |
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| T |
43815239 |
tgctatggaaagatgatcttgtacttgcaagaccatttgacatattcctcaaatggttgttgagcaatggttgttgttttggggtgggaattttgtagtc |
43815338 |
T |
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| Q |
218 |
nnnnnnngttagcatttgaactacttctgacatggatggtctttgggtaggagatgattgtgtacaaagaagtgcagcttgtagagcatttgatgcttct |
317 |
Q |
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| T |
43815339 |
tttttttgttagcatttgaactacttctgacatggatggtctttgggtaggagatgattgtgtacaaagaagtgcagcttgtagagcatttgatgcttct |
43815438 |
T |
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| Q |
318 |
tctacctcaaattttccatgaagagcaggatcaattgatgttgtgatatt |
367 |
Q |
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| T |
43815439 |
tctacctcaaattttccatgaagagcaggatcaattgatgttgtgatatt |
43815488 |
T |
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