View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2677_low_7 (Length: 368)
Name: NF2677_low_7
Description: NF2677
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2677_low_7 |
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Alignment Details
Target: chr3 (Bit Score: 293; Significance: 1e-164; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 293; E-Value: 1e-164
Query Start/End: Original strand, 19 - 334
Target Start/End: Original strand, 22744814 - 22745130
Alignment:
| Q |
19 |
gtaataagggtagaaatttaagaataatgtagtttatgtttgtattttgtaagtgttgctgaatattatatgtaacagaaattgcgtgtcaattggactc |
118 |
Q |
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| T |
22744814 |
gtaataaggatagaaatttaagaataatgtagtttatgtttgtattttgtaagtgttgctgaatattatatgtaacagaaattgcgtgtcaattggactc |
22744913 |
T |
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| Q |
119 |
ttattcttatagctcaagttatgaccgaaaaagtgaagtagtataactgtcacaaaaatcatatgtctttgtcgtaccataatccaagattgtcatgg-t |
217 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||| | |
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| T |
22744914 |
ttattcttatagctcaagttatgaccgaaaaagtgaagtagtataactgtcacaaaaatcacatgtctttgttgtaccataatccaagattgtcatggtt |
22745013 |
T |
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| Q |
218 |
ttgagtccgagcctatatgggaagaactttcgaactgaatgattgttcgtgattagaaatacaagaaaaccagttgatgcaattcataccattgatttaa |
317 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
22745014 |
ttgagtccgagcctatatgggaagaactttcgaactgaatgattgttcgtgattagaaagacaagaaaaccagttgatgcaattcataccattgatttaa |
22745113 |
T |
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| Q |
318 |
ctaaaagcatgcaaaac |
334 |
Q |
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||||||||||||||||| |
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| T |
22745114 |
ctaaaagcatgcaaaac |
22745130 |
T |
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