View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2677_low_8 (Length: 279)

Name: NF2677_low_8
Description: NF2677
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2677_low_8
NF2677_low_8
[»] chr3 (6 HSPs)
chr3 (15-263)||(40196281-40196528)
chr3 (184-251)||(33317060-33317127)
chr3 (27-83)||(43755620-43755676)
chr3 (27-84)||(43481640-43481697)
chr3 (20-83)||(43978625-43978688)
chr3 (27-80)||(37626653-37626706)
[»] chr7 (2 HSPs)
chr7 (20-84)||(11776396-11776460)
chr7 (20-83)||(11773211-11773274)
[»] chr4 (9 HSPs)
chr4 (20-86)||(47680666-47680732)
chr4 (23-86)||(33339049-33339112)
chr4 (20-86)||(51681294-51681361)
chr4 (46-84)||(8445926-8445964)
chr4 (44-73)||(26473406-26473435)
chr4 (45-86)||(26986703-26986744)
chr4 (46-86)||(22681174-22681214)
chr4 (27-83)||(26682785-26682841)
chr4 (45-85)||(47680393-47680433)
[»] chr2 (4 HSPs)
chr2 (27-85)||(10066583-10066641)
chr2 (27-91)||(19548196-19548260)
chr2 (30-84)||(40053217-40053271)
chr2 (43-87)||(39334418-39334462)
[»] chr1 (6 HSPs)
chr1 (45-86)||(39030151-39030192)
chr1 (23-84)||(43834543-43834604)
chr1 (27-86)||(26231702-26231761)
chr1 (46-84)||(11199994-11200032)
chr1 (51-84)||(11766026-11766059)
chr1 (47-91)||(6182444-6182488)
[»] chr6 (2 HSPs)
chr6 (46-86)||(6250160-6250200)
chr6 (47-86)||(18089947-18089986)
[»] chr5 (1 HSPs)
chr5 (22-86)||(28296074-28296138)
[»] chr8 (3 HSPs)
chr8 (27-86)||(5981489-5981548)
chr8 (46-83)||(5073053-5073090)
chr8 (45-86)||(42115205-42115246)


Alignment Details
Target: chr3 (Bit Score: 217; Significance: 1e-119; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 15 - 263
Target Start/End: Original strand, 40196281 - 40196528
Alignment:
Q  15 agtatacattgaatatataagaaagggtatccatatacctaatgccttaaggttttaggtggagatgtggtgcataaaagattcaattaacattaatata 114  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||| |||| |||||||||| |||||||||| |||||||||||||||||||||    
T  40196281 agtatacattgaatatataacaaagggtatccatatacctaatgccttaagattttgggtggagatgcggtgcataaa-gattcaattaacattaatata 40196379  T
Q  115 agatagagaataagaacaaaggaacatgattttatactgattcactccaaccatgacaactacctctaatcctcctcatacagagagagtttgcctcaaa 214  Q
    ||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40196380 aggcagagaataagaacaaaggaacatgattttatactgattcactccaaccatgacaactacctctaatcctcctcatacagagagagtttgcctcaaa 40196479  T
Q  215 cttttgaggacttaatccattataatccaaaccgatttaaagtactagg 263  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||    
T  40196480 cttttgaggacttaatccattataatccaaaccgatttaaagtactagg 40196528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 184 - 251
Target Start/End: Original strand, 33317060 - 33317127
Alignment:
Q  184 tcctcctcatacagagagagtttgcctcaaacttttgaggacttaatccattataatccaaaccgatt 251  Q
    |||||| | ||| ||||||||||||||||||| || |||||||||||||| |||||||||||||||||    
T  33317060 tcctccccttaccgagagagtttgcctcaaaccttggaggacttaatccactataatccaaaccgatt 33317127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 27 - 83
Target Start/End: Original strand, 43755620 - 43755676
Alignment:
Q  27 atatataagaaagggtatccatatacctaatgccttaaggttttaggtggagatgtg 83  Q
    |||||||||| |||| ||||||||||||| | |||||||||||||||||||||||||    
T  43755620 atatataagatagggaatccatatacctattaccttaaggttttaggtggagatgtg 43755676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 27 - 84
Target Start/End: Original strand, 43481640 - 43481697
Alignment:
Q  27 atatataagaaagggtatccatatacctaatgccttaaggttttaggtggagatgtgg 84  Q
    |||||||||| |||| | |||||||||| |||| ||||| ||||||||||||||||||    
T  43481640 atatataagagaggggacccatatacctgatgcattaagattttaggtggagatgtgg 43481697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 20 - 83
Target Start/End: Complemental strand, 43978688 - 43978625
Alignment:
Q  20 acattgaatatataagaaagggtatccatatacctaatgccttaaggttttaggtggagatgtg 83  Q
    |||||| |||||||||| |||  |  |||||||||| |||||||||||||| ||||||||||||    
T  43978688 acattggatatataagagaggagactcatatacctattgccttaaggttttgggtggagatgtg 43978625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 27 - 80
Target Start/End: Original strand, 37626653 - 37626706
Alignment:
Q  27 atatataagaaagggtatccatatacctaatgccttaaggttttaggtggagat 80  Q
    |||||||||| |||  || ||||||||||||| |||||| ||||||||||||||    
T  37626653 atatataagagaggtcatacatatacctaatgtcttaagattttaggtggagat 37626706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 20 - 84
Target Start/End: Complemental strand, 11776460 - 11776396
Alignment:
Q  20 acattgaatatataagaaagggtatccatatacctaatgccttaaggttttaggtggagatgtgg 84  Q
    ||||||||||||||||| |||| | |||||||| |||| |||||||||||| |||||||||||||    
T  11776460 acattgaatatataagagaggggacccatatacataataccttaaggttttgggtggagatgtgg 11776396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 20 - 83
Target Start/End: Complemental strand, 11773274 - 11773211
Alignment:
Q  20 acattgaatatataagaaagggtatccatatacctaatgccttaaggttttaggtggagatgtg 83  Q
    |||||| |||||||| |||||  | |||||||| ||||||||||||||||| | ||||||||||    
T  11773274 acattggatatataataaaggagacccatatacgtaatgccttaaggtttttgatggagatgtg 11773211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 20 - 86
Target Start/End: Original strand, 47680666 - 47680732
Alignment:
Q  20 acattgaatatataagaaagggtatccatatacctaatgccttaaggttttaggtggagatgtggtg 86  Q
    |||||||||||||| || |||  | |||||||||| ||||||||||||||| |||||||||||||||    
T  47680666 acattgaatatatatgagaggagacccatatacctgatgccttaaggttttgggtggagatgtggtg 47680732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 23 - 86
Target Start/End: Original strand, 33339049 - 33339112
Alignment:
Q  23 ttgaatatataagaaagggtatccatatacctaatgccttaaggttttaggtggagatgtggtg 86  Q
    ||||||||||| || ||| ||| ||||||||||||  ||| ||||||||||| |||||||||||    
T  33339049 ttgaatatatatgagaggatattcatatacctaatttcttgaggttttaggttgagatgtggtg 33339112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 20 - 86
Target Start/End: Original strand, 51681294 - 51681361
Alignment:
Q  20 acattgaatatataagaaagggt-atccatatacctaatgccttaaggttttaggtggagatgtggtg 86  Q
    |||||| |||||||||||||||  | |||||||||  || |||||||||||| |||||||||||||||    
T  51681294 acattggatatataagaaagggggacccatataccatataccttaaggttttgggtggagatgtggtg 51681361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 46 - 84
Target Start/End: Original strand, 8445926 - 8445964
Alignment:
Q  46 catatacctaatgccttaaggttttaggtggagatgtgg 84  Q
    ||||||| | |||||||||||||||||||||||||||||    
T  8445926 catatacatgatgccttaaggttttaggtggagatgtgg 8445964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 44 - 73
Target Start/End: Complemental strand, 26473435 - 26473406
Alignment:
Q  44 tccatatacctaatgccttaaggttttagg 73  Q
    ||||||||||||||||||||||||||||||    
T  26473435 tccatatacctaatgccttaaggttttagg 26473406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 45 - 86
Target Start/End: Complemental strand, 26986744 - 26986703
Alignment:
Q  45 ccatatacctaatgccttaaggttttaggtggagatgtggtg 86  Q
    |||||||| ||||||||||||||||| | |||||||||||||    
T  26986744 ccatatacataatgccttaaggttttggatggagatgtggtg 26986703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 46 - 86
Target Start/End: Complemental strand, 22681214 - 22681174
Alignment:
Q  46 catatacctaatgccttaaggttttaggtggagatgtggtg 86  Q
    ||||||||||||| ||||||||||  |||||||||||||||    
T  22681214 catatacctaatgtcttaaggtttagggtggagatgtggtg 22681174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 27 - 83
Target Start/End: Original strand, 26682785 - 26682841
Alignment:
Q  27 atatataagaaagggtatccatatacctaatgccttaaggttttaggtggagatgtg 83  Q
    |||||||||||||| ||| ||||||| |||| | |||| ||||| ||||||||||||    
T  26682785 atatataagaaaggttattcatatacataatactttaaagtttttggtggagatgtg 26682841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 45 - 85
Target Start/End: Original strand, 47680393 - 47680433
Alignment:
Q  45 ccatatacctaatgccttaaggttttaggtggagatgtggt 85  Q
    |||||||||| ||||||||||||||| |||||| |||||||    
T  47680393 ccatatacctgatgccttaaggtttttggtggaaatgtggt 47680433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 27 - 85
Target Start/End: Original strand, 10066583 - 10066641
Alignment:
Q  27 atatataagaaagggtatccatatacctaatgccttaaggttttaggtggagatgtggt 85  Q
    |||||||||| |||  ||||||||||||||||||||||| |||| ||||||||||||||    
T  10066583 atatataagataggagatccatatacctaatgccttaagattttgggtggagatgtggt 10066641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 27 - 91
Target Start/End: Original strand, 19548196 - 19548260
Alignment:
Q  27 atatataagaaagggtatccatatacctaatgccttaaggttttaggtggagatgtggtgcataa 91  Q
    |||||||||| |||  | ||||||| |||||| ||||||||||| ||||||||||||||| ||||    
T  19548196 atatataagagaggagacccatatatctaatgtcttaaggttttgggtggagatgtggtgtataa 19548260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 30 - 84
Target Start/End: Original strand, 40053217 - 40053271
Alignment:
Q  30 tataagaaagggtatccatatacctaatgccttaaggttttaggtggagatgtgg 84  Q
    ||||||| |||| | |||||||| | ||| |||||||||||||||||||||||||    
T  40053217 tataagagaggggacccatatacatgatgtcttaaggttttaggtggagatgtgg 40053271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 43 - 87
Target Start/End: Complemental strand, 39334462 - 39334418
Alignment:
Q  43 atccatatacctaatgccttaaggttttaggtggagatgtggtgc 87  Q
    ||||||||  ||||||||||||  |||||||||||||||||||||    
T  39334462 atccatatttctaatgccttaaaattttaggtggagatgtggtgc 39334418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 38; Significance: 0.000000000002; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 45 - 86
Target Start/End: Original strand, 39030151 - 39030192
Alignment:
Q  45 ccatatacctaatgccttaaggttttaggtggagatgtggtg 86  Q
    |||||||||||||| |||||||||||||||||||||||||||    
T  39030151 ccatatacctaatgtcttaaggttttaggtggagatgtggtg 39030192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 23 - 84
Target Start/End: Original strand, 43834543 - 43834604
Alignment:
Q  23 ttgaatatataagaaagggtatccatatacctaatgccttaaggttttaggtggagatgtgg 84  Q
    |||||||||||||| |||| | |||||||||||||| ||||||||||| | |||||||||||    
T  43834543 ttgaatatataagagaggggacccatatacctaatgtcttaaggtttttgatggagatgtgg 43834604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 27 - 86
Target Start/End: Complemental strand, 26231761 - 26231702
Alignment:
Q  27 atatataagaaagggtatccatatacctaatgccttaaggttttaggtggagatgtggtg 86  Q
    |||||||||| |||| | ||||||||| | | |||||||||||| |||||||||||||||    
T  26231761 atatataagagaggggacccatataccaattaccttaaggttttgggtggagatgtggtg 26231702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 46 - 84
Target Start/End: Original strand, 11199994 - 11200032
Alignment:
Q  46 catatacctaatgccttaaggttttaggtggagatgtgg 84  Q
    ||||| ||||||||||||||||||| |||||||||||||    
T  11199994 catatgcctaatgccttaaggttttgggtggagatgtgg 11200032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 51 - 84
Target Start/End: Complemental strand, 11766059 - 11766026
Alignment:
Q  51 acctaatgccttaaggttttaggtggagatgtgg 84  Q
    |||||||||||||||||||| |||||||||||||    
T  11766059 acctaatgccttaaggttttgggtggagatgtgg 11766026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 47 - 91
Target Start/End: Original strand, 6182444 - 6182488
Alignment:
Q  47 atatacctaatgccttaaggttttaggtggagatgtggtgcataa 91  Q
    |||||||| |||||||||| |||| ||||||||||||||| ||||    
T  6182444 atatacctgatgccttaagattttgggtggagatgtggtgtataa 6182488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 46 - 86
Target Start/End: Original strand, 6250160 - 6250200
Alignment:
Q  46 catatacctaatgccttaaggttttaggtggagatgtggtg 86  Q
    ||||||||||||| ||||| |||||||||||||||||||||    
T  6250160 catatacctaatggcttaaagttttaggtggagatgtggtg 6250200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 47 - 86
Target Start/End: Complemental strand, 18089986 - 18089947
Alignment:
Q  47 atatacctaatgccttaaggttttaggtggagatgtggtg 86  Q
    |||||||||||||||||||||||| |||| ||||||||||    
T  18089986 atatacctaatgccttaaggttttgggtgaagatgtggtg 18089947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 22 - 86
Target Start/End: Complemental strand, 28296138 - 28296074
Alignment:
Q  22 attgaatatataagaaagggtatccatatacctaatgccttaaggttttaggtggagatgtggtg 86  Q
    ||||||| ||||||| |||  | |||||||||||||  ||||||||||| |||||||||||||||    
T  28296138 attgaatgtataagagaggtgacccatatacctaatctcttaaggttttgggtggagatgtggtg 28296074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 32; Significance: 0.000000006; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 27 - 86
Target Start/End: Complemental strand, 5981548 - 5981489
Alignment:
Q  27 atatataagaaagggtatccatatacctaatgccttaaggttttaggtggagatgtggtg 86  Q
    |||||||||| |||| | |||| ||||| ||||||||||||||| |||||| ||||||||    
T  5981548 atatataagagaggggacccatgtacctgatgccttaaggttttgggtggaaatgtggtg 5981489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 46 - 83
Target Start/End: Original strand, 5073053 - 5073090
Alignment:
Q  46 catatacctaatgccttaaggttttaggtggagatgtg 83  Q
    ||||||| ||||||||||||||||| ||||||||||||    
T  5073053 catatacgtaatgccttaaggttttgggtggagatgtg 5073090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 45 - 86
Target Start/End: Original strand, 42115205 - 42115246
Alignment:
Q  45 ccatatacctaatgccttaaggttttaggtggagatgtggtg 86  Q
    |||||||| |||||| |||||||||| |||||||||||||||    
T  42115205 ccatatacataatgcattaaggttttgggtggagatgtggtg 42115246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University