View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2677_low_9 (Length: 250)
Name: NF2677_low_9
Description: NF2677
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2677_low_9 |
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| [»] chr4 (1 HSPs) |
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| [»] chr3 (1 HSPs) |
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| [»] chr5 (1 HSPs) |
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| [»] scaffold0352 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 160; Significance: 2e-85; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 83 - 250
Target Start/End: Original strand, 25900981 - 25901148
Alignment:
| Q |
83 |
ccaagagataattttacaactatagttggtcacatacacagacacaaataaaatgcttaaaaattaaaattgacttattttcatagtagcaattcatgaa |
182 |
Q |
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| T |
25900981 |
ccaagagataattttacaactatagttggtcacatacacagacacaaataaaatgcttaaaaattaaaattgacttattttcacagtagcaattcatgaa |
25901080 |
T |
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| Q |
183 |
tatgttgcaatcgtcaatgtgaacaagttcaatgtagataaatctcaagagaaaaagtatgaataaga |
250 |
Q |
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| T |
25901081 |
tatgttgcaatcgtcaatgtgaacaatttcaatgtagataaatctcaagagaaaaagtatgaataaga |
25901148 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 100; Significance: 1e-49; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 83 - 250
Target Start/End: Complemental strand, 29199486 - 29199320
Alignment:
| Q |
83 |
ccaagagataattttacaactatagttggtcacatacacagacacaaataaaatgcttaaaaattaaaattgacttattttcatagtagcaattcatgaa |
182 |
Q |
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||||||||| ||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||| | |||||||||| ||| |
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| T |
29199486 |
ccaagagatggttttacaactatagttggtcacacacacagaaacaaataaaatgcttaaaaattaaaattgacttattttcaca-tagcaattcaagaa |
29199388 |
T |
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| Q |
183 |
tatgttgcaatcgtcaatgtgaacaagttcaatgtagataaatctcaagagaaaaagtatgaataaga |
250 |
Q |
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| T |
29199387 |
tatgttgctacagtcgctgtgaacaatttcaatatagataaatctaaagagaaaaaatatgaataaga |
29199320 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 85; Significance: 1e-40; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 83 - 250
Target Start/End: Complemental strand, 4351436 - 4351271
Alignment:
| Q |
83 |
ccaagagataattttacaactatagttggtcacatacacagacacaaataaaatgcttaaaaattaaaattgacttattttcatagtagcaattcatgaa |
182 |
Q |
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||||||||| ||||||||||||| ||||||||||||| | ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4351436 |
ccaagagatggttttacaactatatttggtcacatacaaaaacaca--taaaatgcttaaaaattaaaattgacttattttcatagtagcaattcatgaa |
4351339 |
T |
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| Q |
183 |
tatgttgcaatcgtcaatgtgaacaagttcaatgtagataaatctcaagagaaaaagtatgaataaga |
250 |
Q |
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| T |
4351338 |
tgggtttctatagttggtgtgaacaatttcaataaagataaatctgaagagaaaaaatatgaataaga |
4351271 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0352 (Bit Score: 73; Significance: 2e-33; HSPs: 1)
Name: scaffold0352
Description:
Target: scaffold0352; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 83 - 250
Target Start/End: Original strand, 15583 - 15747
Alignment:
| Q |
83 |
ccaagagataattttacaactatagttggtcacatacacagacacaaataaaatgcttaaaaattaaaattgacttattttcatagtagcaattcatgaa |
182 |
Q |
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||||||||| ||||||| ||||| ||||||||||||| | ||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
15583 |
ccaagagatggttttacatctatatttggtcacatacaaaaacaca--taaaatgcttaaaaattaaaattggcttattttcatagtagcaattcatgaa |
15680 |
T |
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| Q |
183 |
tatgttgcaatcgtcaatgtgaacaagttcaatgtagataaatctcaagagaaaaagtatgaataaga |
250 |
Q |
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| ||| | || || ||||||||| |||||| |||||||||| |||||||||| ||||||||||| |
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| T |
15681 |
tgggtttctatagttggtgtgaacaatttcaataaagataaatctgaagagaaaaa-tatgaataaga |
15747 |
T |
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