View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2678_high_5 (Length: 308)
Name: NF2678_high_5
Description: NF2678
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2678_high_5 |
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Alignment Details
Target: chr3 (Bit Score: 187; Significance: 1e-101; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 1 - 239
Target Start/End: Original strand, 39528513 - 39528751
Alignment:
| Q |
1 |
acttaaaaacacaaccatgctattgctattgtttcttttagaagaacnnnnnnngttaacacttactagcaacgtcatacacaataacggcgaccgaaga |
100 |
Q |
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| T |
39528513 |
acttaaaaacacaaccatgctattgctattgtttcttttagaagaacaaagaaagttaatacttactagcaacgtcatacacaataacggcgaccgaaga |
39528612 |
T |
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| Q |
101 |
atctcttatataacttggaatgaggcttctaaatctttcttgccctgcagtatccctgtggagttaaaatagactacattcaaaatatgcnnnnnnnnng |
200 |
Q |
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| T |
39528613 |
atctcttatataacttggaatgaggcttctaaatctttcttgccctgcagtatccctgtggagttaaaatagactacattcaaaatatgcaaaaaaaatg |
39528712 |
T |
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| Q |
201 |
ggtaaaatagcatctacgccacaatgtgaaatctactac |
239 |
Q |
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| T |
39528713 |
ggtaaaatagcatctacgccacaatgtgaaatctactac |
39528751 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 237 - 294
Target Start/End: Original strand, 39529025 - 39529082
Alignment:
| Q |
237 |
tacaacttttagaatactacataccagagctgcaaacgaaccgttcgatcttcaaggt |
294 |
Q |
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| T |
39529025 |
tacaacttttagaatactacataccagagctgcaaacgaactgttcgatcttcaaggt |
39529082 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 54; Significance: 5e-22; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 61 - 158
Target Start/End: Original strand, 37853183 - 37853280
Alignment:
| Q |
61 |
acttactagcaacgtcatacacaataacggcgaccgaagaatctcttatataacttggaatgaggcttctaaatctttcttgccctgcagtatccctg |
158 |
Q |
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| T |
37853183 |
acttactggctacatcatatacaataacagcaacagaagaatctcttatgtagcttggaatgagacttctaaatctttcttggcctgcagtatccctg |
37853280 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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