View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2678_low_1 (Length: 744)
Name: NF2678_low_1
Description: NF2678
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2678_low_1 |
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Alignment Details
Target: chr1 (Bit Score: 567; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 567; E-Value: 0
Query Start/End: Original strand, 19 - 648
Target Start/End: Original strand, 29093799 - 29094428
Alignment:
| Q |
19 |
caaaccgtattgtcgttgcttttataaaatgatttgagcttctaaccttgcttccataacatagataaattgaatccatataaattacggaaacttatac |
118 |
Q |
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| T |
29093799 |
caaaccgtattttcgttgcttttataaaatgatttgagcttctaaccttgcttccataacatagataaattgaatccatataaattacggaaacttatac |
29093898 |
T |
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| Q |
119 |
ctctaaattctttctgcattgttatcttgttctagataagactctaaattctttccgcatcgtta--ttgtcctagctaaggcaatttatttctttccct |
216 |
Q |
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| T |
29093899 |
ctctaaattctttctgcattgttatcttgttctagataagactctaaattctttctgcatcgttagcttgtcctagttaaggcaatttatttattttcct |
29093998 |
T |
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| Q |
217 |
tgtctcttaatctctcccaccaaaacgagttgatcttctatgattttcctcccccaaatttagagaagaaagaagg-tactcataaaaaatgtagggatg |
315 |
Q |
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| T |
29093999 |
tgtctcttaatctctcccaccaaaacgagttgatcttctatgattttcctcccccaaatttagagaagaaagaagggtactcataaaaaatgtagggatg |
29094098 |
T |
|
| Q |
316 |
gattgcgctactaacttaatcagaactcatgtgcatgcctttgacaagtttcatgaccattaattcttgtattatcctccaaactctatccctcgaaaaa |
415 |
Q |
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| T |
29094099 |
gattgcgctactgacttaatcagaactcatgtgcatgcctttgacaagtttcatgaccattaattcttgtattatcctccaaactctatccctcgaaaaa |
29094198 |
T |
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| Q |
416 |
ccaaaattggactttttcttcttgttgaccatggatggaaaacccaactttttcctagttcccatgctttctaatagttgaaagatattcttcataggct |
515 |
Q |
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| T |
29094199 |
ccaaaattggactttttcttcttgttgatcatggatggaaaa-ccaactttttcctagttcccatgctttctaatagttgaaagatattcttcataggct |
29094297 |
T |
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| Q |
516 |
ccctcaaattagcttgtgtactgctttttgaaaaggataactggcttttataaatcgatggcttgtcctaacacctcttcatatagctggaggatatctg |
615 |
Q |
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| T |
29094298 |
ccctcaaattagcttgtgtactgctttttgaaaaggataactggcttttataaatcgatggcttgtcctaacacctcttcatatagctggagg--atctg |
29094395 |
T |
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| Q |
616 |
tttcaattagtacacccaccttcatctatcctg |
648 |
Q |
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| T |
29094396 |
tttcaattagtacacccaccttcatctatcctg |
29094428 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 680 - 740
Target Start/End: Original strand, 29094460 - 29094520
Alignment:
| Q |
680 |
ggtgtgcaaagagtaccggagctcctctgcactctttgatttcatggatttcttctctctc |
740 |
Q |
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| T |
29094460 |
ggtgtgcaaagagtactggagcttctctacacactttgatttcatggatttcttctctctc |
29094520 |
T |
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