View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2678_low_10 (Length: 245)

Name: NF2678_low_10
Description: NF2678
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2678_low_10
NF2678_low_10
[»] chr3 (11 HSPs)
chr3 (5-229)||(2768430-2768658)
chr3 (1-66)||(2755591-2755656)
chr3 (107-226)||(2796826-2796947)
chr3 (107-229)||(2856359-2856483)
chr3 (108-229)||(2789824-2789947)
chr3 (106-229)||(5412373-5412496)
chr3 (107-229)||(2748463-2748587)
chr3 (110-229)||(2839149-2839270)
chr3 (113-193)||(2806732-2806812)
chr3 (124-229)||(2818039-2818146)
chr3 (1-41)||(5412242-5412282)
[»] scaffold0691 (1 HSPs)
scaffold0691 (125-229)||(6701-6807)


Alignment Details
Target: chr3 (Bit Score: 128; Significance: 3e-66; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 5 - 229
Target Start/End: Original strand, 2768430 - 2768658
Alignment:
Q  5 ttaactttccttggcaccatttaaagttactgtaccccaaggaaaaaacaagagaggaaaaaacacaatactaggatgatatacacatgatcccaacagt 104  Q
    |||| ||||||||||||||||  |||||||||||||| |||||||||||||||||| | |||||||||||||||||||||||||||| |||||||||||     
T  2768430 ttaattttccttggcaccattcgaagttactgtaccc-aaggaaaaaacaagagag-agaaaacacaatactaggatgatatacacaagatcccaacagc 2768527  T
Q  105 ata------atatgagatgagagtaaaatggcagaaactgcagtattatctgctcttggccaagttttccaattcctaaaagaagaaacaaatctgctga 198  Q
     ||      ||||||||||||  |||||||||||||||||| ||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  2768528 ttactaccaatatgagatgag--taaaatggcagaaactgctgtattatttgctcttgggcaagttttccaattcctaaaagaagaaacaaatctgctga 2768625  T
Q  199 gtggtgt--gcagagatttttcagacatcaaag 229  Q
    |||||||   |||||||||||||||||||||||    
T  2768626 gtggtgtacacagagatttttcagacatcaaag 2768658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 1 - 66
Target Start/End: Original strand, 2755591 - 2755656
Alignment:
Q  1 aagcttaactttccttggcaccatttaaagttactgtaccccaaggaaaaaacaagagaggaaaaa 66  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2755591 aagcttaactttccttggcaccatttaaagttactgtaccccaaggaaaaaacaagagaggaaaaa 2755656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 107 - 226
Target Start/End: Original strand, 2796826 - 2796947
Alignment:
Q  107 aatatgagatgagagtaaaatggcagaaactgcagtattatctgctcttggccaagttttccaattcctaaaagaagaaacaaatctgctgagtggtgtg 206  Q
    |||||||||||||||| |||||||||||||| ||||||||| ||| || ||  |||| ||  |||||||||||||||||||||||||||||||| |||||    
T  2796826 aatatgagatgagagtgaaatggcagaaacttcagtattatttgccctggggaaagtgtttgaattcctaaaagaagaaacaaatctgctgagtcgtgtg 2796925  T
Q  207 --cagagatttttcagacatca 226  Q
      || |||||||||||||||||    
T  2796926 cacaaagatttttcagacatca 2796947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 107 - 229
Target Start/End: Complemental strand, 2856483 - 2856359
Alignment:
Q  107 aatatgagatgagagtaaaatggcagaaactgcagtattatctgctcttggccaagttttccaattcctaaaagaagaaacaaatctgctgagtggtgt- 205  Q
    ||||||| |||||||| |||||||||||||||||||||| | ||| || ||  |||| ||||| |||||||||||||||||||||||  |||| |||||     
T  2856483 aatatgatatgagagttaaatggcagaaactgcagtattgtttgccctgggggaagtgttccagttcctaaaagaagaaacaaatcttttgagaggtgta 2856384  T
Q  206 -gcagagatttttcagacatcaaag 229  Q
      |||||||||||||||||||||||    
T  2856383 cacagagatttttcagacatcaaag 2856359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 108 - 229
Target Start/End: Original strand, 2789824 - 2789947
Alignment:
Q  108 atatgagatgagagtaaaatggcagaaactgcagtattatctgctcttggccaagttttccaattcctaaaagaagaaacaaatctgctgagtggtgtg- 206  Q
    ||||||||||||| | |||||||||||||||||||||||| ||  || ||  |||| ||  ||||||||||||||||||||||||| ||||||||||||     
T  2789824 atatgagatgagactgaaatggcagaaactgcagtattatttgtcctgggggaagtgttggaattcctaaaagaagaaacaaatctcctgagtggtgtgc 2789923  T
Q  207 -cagagatttttcagacatcaaag 229  Q
     || |||||||| |||||||||||    
T  2789924 acaaagattttttagacatcaaag 2789947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 106 - 229
Target Start/End: Original strand, 5412373 - 5412496
Alignment:
Q  106 taatatgagatgagagtaaaatggcagaaactgcagtattatctgctcttggccaagttttccaattcctaaaagaagaaacaaatctgctgagtggtgt 205  Q
    ||||||||| | ||||| |||||||||||||||||||||| | ||| |||||  || | |||||||||||| ||||||||||||||| |||||  ||| |    
T  5412373 taatatgagctaagagttaaatggcagaaactgcagtattgtttgcccttgggaaactgttccaattcctagaagaagaaacaaatcggctgaaaggtat 5412472  T
Q  206 gcagagatttttcagacatcaaag 229  Q
     || ||||||||||||||||||||    
T  5412473 acacagatttttcagacatcaaag 5412496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 107 - 229
Target Start/End: Original strand, 2748463 - 2748587
Alignment:
Q  107 aatatgagatgagagtaaaatggcagaaactgcagtattatctgctcttggccaagttttccaattcctaaaagaagaaacaaatctgctgagtggtgt- 205  Q
    |||||||||||||||| |||||||||||||||||||||  | ||  || ||  |||| ||||| ||||||||||||||||||||||| |||||  ||||     
T  2748463 aatatgagatgagagtgaaatggcagaaactgcagtatcgtttgtcctgggggaagtgttccagttcctaaaagaagaaacaaatcttctgagaagtgta 2748562  T
Q  206 -gcagagatttttcagacatcaaag 229  Q
      |||||||||||||||||||||||    
T  2748563 cacagagatttttcagacatcaaag 2748587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 110 - 229
Target Start/End: Complemental strand, 2839270 - 2839149
Alignment:
Q  110 atgagatgagagtaaaatggcagaaactgcagtattatctgctcttggccaagttttccaattcctaaaagaagaaacaaatctgctgagtggtgt--gc 207  Q
    |||| |||||||| |||||||||| ||||||||||| | ||| || ||  |||| ||| ||||||||||||||||||||||||| ||||| |||||   |    
T  2839270 atgatatgagagttaaatggcagagactgcagtattgtttgccctaggggaagtgttcaaattcctaaaagaagaaacaaatcttctgagaggtgtacac 2839171  T
Q  208 agagatttttcagacatcaaag 229  Q
    |||||||||||||| |||||||    
T  2839170 agagatttttcagatatcaaag 2839149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 113 - 193
Target Start/End: Original strand, 2806732 - 2806812
Alignment:
Q  113 agatgagagtaaaatggcagaaactgcagtattatctgctcttggccaagttttccaattcctaaaagaagaaacaaatct 193  Q
    |||||||||| |||||||||||||||||||||||| ||| ||||   |||| |||| ||||||||||||||||||||||||    
T  2806732 agatgagagtgaaatggcagaaactgcagtattatttgcccttgatgaagtgttccgattcctaaaagaagaaacaaatct 2806812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 124 - 229
Target Start/End: Original strand, 2818039 - 2818146
Alignment:
Q  124 aaatggcagaaactgcagtattatctgctcttggcc-aagttttccaattcctaaaagaagaaacaaatctgctgagtggtgt--gcagagatttttcag 220  Q
    ||||||||||||||||||||| ||| || |||| |  |||| || || |||||||||||||||||||| || ||||| |||||   ||||||||||||||    
T  2818039 aaatggcagaaactgcagtatcatcagc-cttgtcggaagtgtttcagttcctaaaagaagaaacaaagcttctgagaggtgtacacagagatttttcag 2818137  T
Q  221 acatcaaag 229  Q
    |||||||||    
T  2818138 acatcaaag 2818146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 5412242 - 5412282
Alignment:
Q  1 aagcttaactttccttggcaccatttaaagttactgtaccc 41  Q
    |||||||| ||||||| |||||||| |||||||||||||||    
T  5412242 aagcttaaatttccttagcaccattcaaagttactgtaccc 5412282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0691 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 1)
Name: scaffold0691
Description:

Target: scaffold0691; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 125 - 229
Target Start/End: Complemental strand, 6807 - 6701
Alignment:
Q  125 aatggcagaaactgcagtattatctgctcttggccaagttttccaattcctaaaagaagaaacaaatctgctgagtggtgt--gcagagatttttcagac 222  Q
    ||||||||||||||||||||| | ||| || ||  || | ||||||||||||||| ||||||||||||| ||||| |||||   || ||||||| |||||    
T  6807 aatggcagaaactgcagtattgtttgccctcggagaattgttccaattcctaaaaaaagaaacaaatcttctgagaggtgtacacacagattttacagac 6708  T
Q  223 atcaaag 229  Q
    |||||||    
T  6707 atcaaag 6701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University