View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2678_low_2 (Length: 638)
Name: NF2678_low_2
Description: NF2678
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2678_low_2 |
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Alignment Details
Target: chr2 (Bit Score: 358; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 358; E-Value: 0
Query Start/End: Original strand, 224 - 601
Target Start/End: Complemental strand, 29036248 - 29035871
Alignment:
| Q |
224 |
catggcgaaaagcaaagatgatataaaatatggaacagcacaagcaaagctatcagaagatgaagcactgagggtacgctacaagcatggtacaccactt |
323 |
Q |
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| T |
29036248 |
catggcgaaaagcaaagatgatataaaatatggaacagcacaagcaaagctatcagaagatgaagtactgagggtacgctacaagcatggtacaccactt |
29036149 |
T |
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| Q |
324 |
gaaggaggaaagattgcagattctgaaccagttgatttgttttcaagtgcacaaaatatttcaaagagtgatcaacaacaacaaactgcagattctaatc |
423 |
Q |
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| T |
29036148 |
gaaggaggaaagattgcagattctgaaccagttgatttgttttcaagtgcacaaaatatttcaaagagtgatcaacaacaacaaactgcagattctaatc |
29036049 |
T |
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| Q |
424 |
aatctcagttgcaacgtgatgacacaaaagatggagaaggagattctactgatttcactactggtgctccttgcttacctcacaagaacaagcctcaaac |
523 |
Q |
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| T |
29036048 |
aatctcagttgcaacgtgatgacacaaaagatggagaaggagattctactgatttcactcctggtgctccttgtttacctcacaagaacaagcctcaaac |
29035949 |
T |
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| Q |
524 |
acttggtcataaattttgatgataaaataagaacatagaaatattaattatgtgttccatatgtatattaattttaac |
601 |
Q |
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| T |
29035948 |
acttggtcataaattttaatgataaaataagaacatagaagtattaattatgtgttccatatgtatattaattttaac |
29035871 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 18 - 226
Target Start/End: Complemental strand, 29036498 - 29036290
Alignment:
| Q |
18 |
aaattttaccaccgatgtctcgtggaacattttcaatttccacaatcaaccagttgtcaccatttagaactcttcaaccttgctcatgcacacttgtcac |
117 |
Q |
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| T |
29036498 |
aaattttaccaccgatgtctcgtggaacattttcaatttccacaatcaaccagttgtcaccacttagaactcttcaaccttgctcatgcacacttgtcac |
29036399 |
T |
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| Q |
118 |
ttgaaagtgcaaacaaccagccacgcatcacagtgacctctaccctataaatgcactctttttcaccttcatctttcaaatcaaaactctactcataaat |
217 |
Q |
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| T |
29036398 |
ttgaaagtgcaaacaaccagccacgcatcacagtgacctctaccctataaatgcactctttttcaccttcatctttcaaatcaaaactctactcataaat |
29036299 |
T |
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| Q |
218 |
aaacaacat |
226 |
Q |
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| T |
29036298 |
aaacaacat |
29036290 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 566 - 624
Target Start/End: Complemental strand, 29035870 - 29035812
Alignment:
| Q |
566 |
attaattatgtgttccatatgtatattaattttaacttttctgtgtgttttctgatacc |
624 |
Q |
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| T |
29035870 |
attaattatgtgttccatatgtatattaattttaacttttgtgtgtgttttctgatacc |
29035812 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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