View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2678_low_3 (Length: 446)
Name: NF2678_low_3
Description: NF2678
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2678_low_3 |
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| [»] scaffold0432 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 389; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 389; E-Value: 0
Query Start/End: Original strand, 16 - 440
Target Start/End: Complemental strand, 30836067 - 30835643
Alignment:
| Q |
16 |
tctctctccttccctttattttgagaagattttcaagttttctcttttgcactgtaatggggttttccaatttggggtttcctcttttctgcagagatca |
115 |
Q |
| |
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|||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
30836067 |
tctctctcctgccctttattctgagaagattttcaagttttctcttttgcactgtaatgcggttttccaatttggggtttcctcttttctgcagagatca |
30835968 |
T |
|
| Q |
116 |
tcttcaatattcaatcctctcaaatttttcttcaaattcaatctcaaatcgttctcgagaaggaaataaaatacttctgcaactgaaatcgtttatgcat |
215 |
Q |
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||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30835967 |
tcttcaatattcaatcctctcaagtttttcttcaaattcgatctcaaatcgttctcgagaaggaaataaaatacttctgcaactgaaatcgtttatgcat |
30835868 |
T |
|
| Q |
216 |
aacgcgccatgaacaatttcttccgccattcccttttatgaatctcttatgttctctcttaattttcttttctacgacttctttttgagacatatttttg |
315 |
Q |
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||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
30835867 |
aacgcgccatgaacaatttcttctgccattcccttttatgaatctcttatgttctctcttaattttcttttctacgacttcattttgagacatatttttg |
30835768 |
T |
|
| Q |
316 |
ttacaaacacacccttgaatcaattcatgtttttgaaatttataattagggttgtttttatttctgtgtgcaggttcaaagttggattaaaaggatgtgt |
415 |
Q |
| |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30835767 |
ttacaaacacaaccttgaatcaattcatgtttttgaaatttataattagggttgtttttatttctgtgtgcaggttcaaagttggattaaaaggatgtgt |
30835668 |
T |
|
| Q |
416 |
attggcagcatagtggttcatctca |
440 |
Q |
| |
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|||||||||||| |||||||||||| |
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| T |
30835667 |
attggcagcatattggttcatctca |
30835643 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 341; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 341; E-Value: 0
Query Start/End: Original strand, 16 - 440
Target Start/End: Complemental strand, 3192767 - 3192356
Alignment:
| Q |
16 |
tctctctccttccctttattttgagaagattttcaagttttctcttttgcactgtaatggggttttccaatttggggtttcctcttttctgcagagatca |
115 |
Q |
| |
|
|||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
3192767 |
tctctctcatgccctttattttgagaagattttcaagttttctcttttgcactgtaatggggttttccaatttgggatttcctcttttctgcagagatca |
3192668 |
T |
|
| Q |
116 |
tcttcaatattcaatcctctcaaatttttcttcaaattcaatctcaaatcgttctcgagaaggaaataaaatacttctgcaactgaaatcgtttatgcat |
215 |
Q |
| |
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|||||||||| |||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||| | ||||||||||||||||||||||||| |
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| T |
3192667 |
tcttcaatatccaatcctctcaaatttttcttcaaattcgatctcaaatcattctcgagaaggaaataaaattcatctgcaactgaaatcgtttatgcat |
3192568 |
T |
|
| Q |
216 |
aacgcgccatgaacaatttcttccgccattcccttttatgaatctcttatgttctctcttaattttcttttctacgacttctttttgagacatatttttg |
315 |
Q |
| |
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||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
3192567 |
aacgcgccatgaacaatttcttctgccattcccttttatgaatctcttatgttctctcttaattttcttttctacgacttctt-------------tttg |
3192481 |
T |
|
| Q |
316 |
ttacaaacacacccttgaatcaattcatgtttttgaaatttataattagggttgtttttatttctgtgtgcaggttcaaagttggattaaaaggatgtgt |
415 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3192480 |
ttacaaacacaaccttgaatcaattcatgtttttgaaatttataattagggttgtttttatttctgtgtgcaggttcaaagttggattaaaaggatgtgt |
3192381 |
T |
|
| Q |
416 |
attggcagcatagtggttcatctca |
440 |
Q |
| |
|
||||||||||||||||||||||||| |
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| T |
3192380 |
attggcagcatagtggttcatctca |
3192356 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 252; Significance: 1e-140; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 16 - 343
Target Start/End: Original strand, 1142224 - 1142551
Alignment:
| Q |
16 |
tctctctccttccctttattttgagaagattttcaagttttctcttttgcactgtaatggggttttccaatttggggtttcctcttttctgcagagatca |
115 |
Q |
| |
|
|||||||| | |||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||| |||||||||||| |||||||| || |
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|
| T |
1142224 |
tctctctcatgccctttattttgagaagattttcaagttttctctgttgcactgtaatggagttttccaatttggtgtttcctcttttttgcagagacca |
1142323 |
T |
|
| Q |
116 |
tcttcaatattcaatcctctcaaatttttcttcaaattcaatctcaaatcgttctcgagaaggaaataaaatacttctgcaactgaaatcgtttatgcat |
215 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||| ||||||||| ||||| |||||||||| ||||||| ||||||||||||||||||||||||| |
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| T |
1142324 |
tcttcaatattcaatcctctcaaatttttctttaaattcgatctcaaattgttcttgagaaggaaacaaaatacatctgcaactgaaatcgtttatgcat |
1142423 |
T |
|
| Q |
216 |
aacgcgccatgaacaatttcttccgccattcccttttatgaatctcttatgttctctcttaattttcttttctacgacttctttttgagacatatttttg |
315 |
Q |
| |
|
||||| ||| | |||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
1142424 |
aacgcaccacggacaattgcttctgccattcccttttatgaatctcttatgttctctcttaattttcttttctacgacttctttttgagacatatttttg |
1142523 |
T |
|
| Q |
316 |
ttacaaacacacccttgaatcaattcat |
343 |
Q |
| |
|
||||||||||| |||||||||||||||| |
|
|
| T |
1142524 |
ttacaaacacaaccttgaatcaattcat |
1142551 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 44; Significance: 7e-16; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 329 - 423
Target Start/End: Complemental strand, 2192643 - 2192544
Alignment:
| Q |
329 |
cttgaatcaattcatgtttttgaaatttataattagggttgtttttat-----ttctgtgtgcaggttcaaagttggattaaaaggatgtgtattggcag |
423 |
Q |
| |
|
||||||||||||||||||| ||||||| |||||||| |||||||||| | ||||||||| |||| |||||| | ||||||||||||||||||||| |
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| T |
2192643 |
cttgaatcaattcatgtttatgaaattactaattaggtttgtttttattattgtactgtgtgcatgttcgaagttgaactaaaaggatgtgtattggcag |
2192544 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0432 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0432
Description:
Target: scaffold0432; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 412 - 440
Target Start/End: Complemental strand, 4755 - 4727
Alignment:
| Q |
412 |
gtgtattggcagcatagtggttcatctca |
440 |
Q |
| |
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||||||||||||||||||||||||||||| |
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| T |
4755 |
gtgtattggcagcatagtggttcatctca |
4727 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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