View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2678_low_4 (Length: 351)
Name: NF2678_low_4
Description: NF2678
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2678_low_4 |
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Alignment Details
Target: chr1 (Bit Score: 103; Significance: 3e-51; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 218 - 335
Target Start/End: Original strand, 33487392 - 33487510
Alignment:
| Q |
218 |
gtagaaaacaatttagcagtgacttggatttcaactccattgagctctaaaaattgaaaa-atagttgaaaacttttaatggattgttgctgcaaccttg |
316 |
Q |
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| T |
33487392 |
gtagaaaacaatttagcagtgacttggatttcaactccattgagctctaaaaattaaaaaaatagttgaaaactttgaatggattgttgctgcaaccttg |
33487491 |
T |
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| Q |
317 |
catttgtggaaatgataac |
335 |
Q |
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| T |
33487492 |
catttgtggaaatgataac |
33487510 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 56 - 176
Target Start/End: Original strand, 33487242 - 33487354
Alignment:
| Q |
56 |
acaacactatgtaaagaacacttcttaaacttttgaagaattgactatacaatttataaaatattattactatatttgaacgattaaccggtgtcatttt |
155 |
Q |
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| T |
33487242 |
acaacactatataaagaacacttcttaaa--------gaattgactatacaatttataaaatattattactatatttgaattattaaccgatgtcatttt |
33487333 |
T |
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| Q |
156 |
caccaaatttctatttactcc |
176 |
Q |
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||||||||||||||||||||| |
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| T |
33487334 |
caccaaatttctatttactcc |
33487354 |
T |
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