View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2678_low_7 (Length: 276)
Name: NF2678_low_7
Description: NF2678
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2678_low_7 |
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Alignment Details
Target: chr6 (Bit Score: 195; Significance: 1e-106; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 8 - 260
Target Start/End: Original strand, 30836064 - 30836319
Alignment:
| Q |
8 |
gagatgaagaaatggagcataagaagatcctttcaaagaagaagaagaatgcatgagttcattgaaagggatgttacccggatattagaactgtgtattt |
107 |
Q |
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| T |
30836064 |
gagataaagaaatggagcataagaagatcctttcaaagaagaagaagaatgcatgagttcattgaaagggatgttacccggatattagaactgtgtattt |
30836163 |
T |
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| Q |
108 |
agagaagatggaagataagacattggcatcagttgannnnnnnncgtggaaaattgaaaagatttgtggga----aagtaagttaacttcttaaccttga |
203 |
Q |
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| T |
30836164 |
agagaagatggaagataagacattgacatcagttga-tttttttcgtgaaaaattggaaagatttgtgggaaagtaagtaagttaacttcttaaccttga |
30836262 |
T |
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| Q |
204 |
aaatgaacaaatgtgaattgggtggagctgctgaactgccttgtgctcagtaatgtt |
260 |
Q |
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| T |
30836263 |
aaatgaacaaatgtgaattgggtggagctgctgaactgccttgtgctcagtaatgtt |
30836319 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 159; E-Value: 1e-84
Query Start/End: Original strand, 8 - 260
Target Start/End: Complemental strand, 18646417 - 18646162
Alignment:
| Q |
8 |
gagatgaagaaatggagcataagaagatcctttcaaagaagaagaagaatgcatgagttcattgaaagggatgttacccggatattagaactgtgtattt |
107 |
Q |
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| T |
18646417 |
gagataaagaaatggagcataagaagaccctttcaaagaagaagaagaatgcatgagttcattgaaagggatgttacccagatattagaactgagtattt |
18646318 |
T |
|
| Q |
108 |
agagaagatggaagataagacattggcatcagttgannnnnnnncgtggaaaattgaaaagatttgtgggaa----agtaagttaacttcttaaccttga |
203 |
Q |
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| T |
18646317 |
agagaagatggaagataaaacattggcatcatttga-tttttttcgtggaaaattgaaaagatttgtgggaaagtgagtaagttaacttcttaatcttga |
18646219 |
T |
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| Q |
204 |
aaatgaacaaatgtgaattgggtggagctgctgaactgccttgtgctcagtaatgtt |
260 |
Q |
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| T |
18646218 |
aaatgaacaaatgtgaattgtgtgtggctattgaactaccttgtgctcagtaatgtt |
18646162 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 172; Significance: 2e-92; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 8 - 260
Target Start/End: Original strand, 3192764 - 3193019
Alignment:
| Q |
8 |
gagatgaagaaatggagcataagaagatcctttcaaagaagaagaagaatgcatgagttcattgaaagggatgttacccggatattagaactgtgtattt |
107 |
Q |
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| T |
3192764 |
gagataaagaaatggagcataagaagatcctttcaaagaagaagaagaatgcataagttcattgaaagagatgttacccgaatattaggactgagtattt |
3192863 |
T |
|
| Q |
108 |
agagaagatggaagataagacattggcatcagttgannnnnnnncgtggaaaattgaaaagatttgtgggaa----agtaagttaacttcttaaccttga |
203 |
Q |
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| T |
3192864 |
agagaagatggaagataagacatcggcatcagttgatttttttg-gtggaaaattgaaaagatttgtggaaaagtgagtaagttaacttcttaaccttga |
3192962 |
T |
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| Q |
204 |
aaatgaacaaatgtgaattgggtggagctgctgaactgccttgtgctcagtaatgtt |
260 |
Q |
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| T |
3192963 |
aaatgaacaaatgtgaattgggtggagctgctgaagtgccttgtgctcagtaatgtt |
3193019 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 163; E-Value: 4e-87
Query Start/End: Original strand, 8 - 260
Target Start/End: Complemental strand, 8023191 - 8022936
Alignment:
| Q |
8 |
gagatgaagaaatggagcataagaagatcctttcaaagaagaagaagaatgcatgagttcattgaaagggatgttacccggatattagaactgtgtattt |
107 |
Q |
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| T |
8023191 |
gagataaagaaatggagcataagaagaccctttcaaagaagaagaagaatgcatgagttcattgaaagggatgttacccagatattagaactgagtattt |
8023092 |
T |
|
| Q |
108 |
agagaagatggaagataagacattggcatcagttgannnnnnnncgtggaaaattgaaaagatttgtgggaa----agtaagttaacttcttaaccttga |
203 |
Q |
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|||||||||||||||||| |||||||||||| |||| |||||||||||||||||||||||||||| |||||||||||||||||| ||||| |
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| T |
8023091 |
agagaagatggaagataaaacattggcatcatttga-tttttttcgtggaaaattgaaaagatttgtgggaaagtgagtaagttaacttcttaatcttga |
8022993 |
T |
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| Q |
204 |
aaatgaacaaatgtgaattgggtggagctgctgaactgccttgtgctcagtaatgtt |
260 |
Q |
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| T |
8022992 |
aaatgaacaaatgtgaattgggtgaggctattgaactaccttgtgctcagtaatgtt |
8022936 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 154; Significance: 9e-82; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 154; E-Value: 9e-82
Query Start/End: Original strand, 8 - 260
Target Start/End: Complemental strand, 1142227 - 1141970
Alignment:
| Q |
8 |
gagatgaagaaatggagcataagaagatcctttcaaagaagaagaagaa---tgcatgagttcattgaaagggatgttacccggatattagaactgtgta |
104 |
Q |
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||||| |||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||| || ||| |
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| T |
1142227 |
gagataaagaaatggagcataagaagattctttcaaagaagaagaagaagaatgcatgagttcattgaaagggatgttacccagatattagaattgagta |
1142128 |
T |
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| Q |
105 |
tttagagaagatggaagataagacattggcatcagttgannnnnnnncgtggaaaattgaaaagatttgtgggaaagtaagt---taacttcttaacctt |
201 |
Q |
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|||||||||||||||||||||||||| ||||||||||| |||| |||||||||||||||||||||||||| ||| | ||||||||||||| |
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| T |
1142127 |
tttagagaagatggaagataagacatcagcatcagttga-tttttttcgtgcaaaattgaaaagatttgtgggaaagtgagtaagttacttcttaacctt |
1142029 |
T |
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| Q |
202 |
gaaaatgaacaaatgtgaattgggtggagctgctgaactgccttgtgctcagtaatgtt |
260 |
Q |
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| T |
1142028 |
gaaaatgaacaaatgtgaattgggtggggctactgaactgccttgtgctcagtaatgtt |
1141970 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 124; Significance: 8e-64; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 124; E-Value: 8e-64
Query Start/End: Original strand, 8 - 260
Target Start/End: Complemental strand, 31982282 - 31982024
Alignment:
| Q |
8 |
gagatgaagaaatggagcataagaagatcctttcaaagaagaa---gaagaatgcat--gagttcattgaaagggatgttacccggatattagaactgtg |
102 |
Q |
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||||| ||||||||||||||||||||| ||||||||||||||| ||||||||||| |||||||||||||| |||||||||| |||||||||| || | |
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| T |
31982282 |
gagataaagaaatggagcataagaagaccctttcaaagaagaaaaagaagaatgcatatgagttcattgaaagagatgttacccagatattagaagtgag |
31982183 |
T |
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| Q |
103 |
tatttagagaagatggaagataagacattggcatcagttgannnnnnnncgtggaaaattgaaaagatttgtgggaa----agtaagttaacttcttaac |
198 |
Q |
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|||||||||||||||||||||||||||||| |||| ||||| |||| ||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
31982182 |
tatttagagaagatggaagataagacattgacatctgttga-tttttttcgtgaaaaattgaaaagatttgtgggaaagtgagtaagttaacttcttaac |
31982084 |
T |
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| Q |
199 |
cttgaaaatgaacaaatgtgaattgggtggagctgctgaactgccttgtgctcagtaatgtt |
260 |
Q |
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||||||||||||||||||||||||||||| ||| ||||||| | |||| ||||||||||| |
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| T |
31982083 |
cttgaaaatgaacaaatgtgaattgggtgaggctactgaactacgttgt--tcagtaatgtt |
31982024 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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