View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2678_low_8 (Length: 250)
Name: NF2678_low_8
Description: NF2678
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2678_low_8 |
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Alignment Details
Target: chr3 (Bit Score: 159; Significance: 9e-85; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 159; E-Value: 9e-85
Query Start/End: Original strand, 36 - 237
Target Start/End: Complemental strand, 2768403 - 2768201
Alignment:
| Q |
36 |
ttgttatcaacctatggtaatatgatgaaatgaaacatgattagttttatcaacttggtactatatgcagacgatgttttttcatagaaaaaaggtttat |
135 |
Q |
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| T |
2768403 |
ttgttatcaacccatcgtaatatgatgaaatgaaaggtgattagttttatcaacttggtactatatgcagacgatgttttttcaaagaaaaaaggtttat |
2768304 |
T |
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| Q |
136 |
tattctgtattttgtcaactgaatgtgatcaagtatgaatggttgttttattcaatgattttatttatcctaccccatttgaaattcaacag-cttagca |
234 |
Q |
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| T |
2768303 |
tattctgtattttgtcaaccgaatgtgatcaagtatgaatgcttgttttattcaatgattttatctctcctaccccatttgaaattcaacagacttagca |
2768204 |
T |
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| Q |
235 |
tat |
237 |
Q |
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||| |
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| T |
2768203 |
tat |
2768201 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 1 - 69
Target Start/End: Complemental strand, 2755593 - 2755525
Alignment:
| Q |
1 |
cttcaaaaagtcaaactaaaggaatgccatcacttttgttatcaacctatggtaatatgatgaaatgaa |
69 |
Q |
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| T |
2755593 |
cttcaaaaagtcaaactaaaggaatgccatcacttttgttatcaacctatggtaatatgatgaaatgaa |
2755525 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 64 - 203
Target Start/End: Complemental strand, 2805232 - 2805093
Alignment:
| Q |
64 |
aatgaaacatgattagtttt-atcaacttggtactatatgcagacgatgttttttcatagaaaaaaggtttattattctgtattttgtcaactgaatgtg |
162 |
Q |
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| T |
2805232 |
aatggaacatgattaatttttatcaacttggtattaaatgcagaccatgtttct-caaagaaaaaaggtttattattctgtaattttaacactgaatgtg |
2805134 |
T |
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| Q |
163 |
atcaagtatgaatggttgttttattcaatgattttatttat |
203 |
Q |
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| T |
2805133 |
atcaagtatgaatgattgttttattcaatgcttttatttat |
2805093 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 18 - 227
Target Start/End: Complemental strand, 2806647 - 2806442
Alignment:
| Q |
18 |
aaaggaatgccatcacttttgttatcaacctatggtaatatgatgaaatgaaacatgattagttttatcaacttggtactatatgcagacgatgtttttt |
117 |
Q |
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| T |
2806647 |
aaaggaatgccgttacttttgttatcagcatatggtaacgtgatgagcggaa-catgattagttttgtcaacttggtattatatgcagaccatgttttct |
2806549 |
T |
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| Q |
118 |
catagaaaaaaggtttattattctgtattttgtcaactgaatgtgatcaagtatgaatggttgttttattcaatgattttatttatcctaccccatttga |
217 |
Q |
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| T |
2806548 |
ccaagattttt--tttattagtttgtaattttaccactgaatgtggtcaagtatgaattgttgttttattcaatgcttttatttatgctacccca-ttga |
2806452 |
T |
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| Q |
218 |
aattcaacag |
227 |
Q |
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||| |||||| |
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| T |
2806451 |
aatacaacag |
2806442 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 131 - 190
Target Start/End: Complemental strand, 2755522 - 2755463
Alignment:
| Q |
131 |
tttattattctgtattttgtcaactgaatgtgatcaagtatgaatggttgttttattcaa |
190 |
Q |
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| T |
2755522 |
tttattattctgtattttgtcaacggaatgtgatcaagtatgaattcttgttttattcaa |
2755463 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 169 - 227
Target Start/End: Complemental strand, 2748180 - 2748122
Alignment:
| Q |
169 |
tatgaatggttgttttattcaatgattttatttatcctaccccatttgaaattcaacag |
227 |
Q |
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| T |
2748180 |
tatgaatggttgtttaattgaatgattttatttatgctaccccgtttgaaattcaacag |
2748122 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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