View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2678_low_9 (Length: 249)
Name: NF2678_low_9
Description: NF2678
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2678_low_9 |
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Alignment Details
Target: chr1 (Bit Score: 211; Significance: 1e-116; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 1 - 236
Target Start/End: Original strand, 5909978 - 5910213
Alignment:
| Q |
1 |
atttctccatgtatgttccattcacttatgtcgtcgtcttcattcatgtttaccattccaattttcatttctttaccaannnnnnngcctaaaaaatttg |
100 |
Q |
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| T |
5909978 |
atttctccatgtatgttccattcacttatgtcgtcgtcttcgttcatgtttaccattccaattttcatttctttaccaattttttcgcctaaaaaatttg |
5910077 |
T |
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| Q |
101 |
gtacttctatcttagttccgtttgcctttggcttccatgattttggttttggtaattcctctaacacccctttaatttgtatgcctttttctgcctgcaa |
200 |
Q |
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| T |
5910078 |
gtacttctatcttagttccgtttgcctttggcttccatgattttggttttggtaattcctctaacacccctttaatttgtatgcctttttctgcctgcaa |
5910177 |
T |
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| Q |
201 |
gtttgaagatcacacaaatatacaagatatattcct |
236 |
Q |
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| T |
5910178 |
gtttgaagatcacacaaatatacaagatatattcct |
5910213 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 2 - 233
Target Start/End: Original strand, 5914476 - 5914703
Alignment:
| Q |
2 |
tttctccatgtatgttccattcacttatgtcgtcgtcttcattcatgtttaccattccaattttcatttctttaccaannnnnnngcctaaaaaatttgg |
101 |
Q |
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|||||||||||| ||||||||| |||| ||||||||||| | |||||| |||||||||||||| ||| | ||||| | |||||||||| |||| |
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| T |
5914476 |
tttctccatgtacgttccattcgcttacatcgtcgtcttcgtccatgttcaccattccaattttaattcccttaccgattttttcgcctaaaaaacttgg |
5914575 |
T |
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| Q |
102 |
tacttctatcttagttccgtttgcctttggcttccatgattttggttttggtaattcctctaacacccctttaatttgtatgcctttttctgcctgcaag |
201 |
Q |
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|||||||||||||||||| || |||||| |||| |||||||| |||||||||||| || || || |||| |||| |||| | |||| ||| |||| |
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| T |
5914576 |
tacttctatcttagttccatt---ctttgggttccttgattttgcttttggtaattcttccaatactgctttcattttcatgctatcttctccctacaag |
5914672 |
T |
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| Q |
202 |
tttgaagatcacacaaatatacaagatatatt |
233 |
Q |
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|||||||||||| ||||||| ||||| |||| |
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| T |
5914673 |
-ttgaagatcacaaaaatataaaagatttatt |
5914703 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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