View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2679_high_4 (Length: 353)
Name: NF2679_high_4
Description: NF2679
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2679_high_4 |
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Alignment Details
Target: chr4 (Bit Score: 145; Significance: 3e-76; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 145; E-Value: 3e-76
Query Start/End: Original strand, 42 - 242
Target Start/End: Original strand, 56068678 - 56068879
Alignment:
| Q |
42 |
aaatggataagagggagcattacaattaattatgttgcttnnnnnnngggattataattactaatgcatatcttttcattagagttgacttcaaatggtt |
141 |
Q |
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| T |
56068678 |
aaatggataagagggagcattataattaattatgttgcttaaaaaaagggattata---actaatgcatatcttttcattagagttgacttcaaatggtt |
56068774 |
T |
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| Q |
142 |
taattaattgcccccctcatagtggatgtaggcactaggcagggtaatgcattatctgaagtccttgcttaaatgaaata----gtgtaggacaagagca |
237 |
Q |
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| T |
56068775 |
taattaattgcccccctcatagtggatgtaggcactaggcagggtaatgcattatctgaaggccttgcttaaatgaaatagtacgtgtaggacaagagca |
56068874 |
T |
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| Q |
238 |
ttcaa |
242 |
Q |
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||||| |
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| T |
56068875 |
ttcaa |
56068879 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 271 - 347
Target Start/End: Original strand, 56069024 - 56069109
Alignment:
| Q |
271 |
aaatgaaatagtgtatgacatgacattgtagagaagagacaaggatga---------tgtttgtctggagttaagtatatgctacc |
347 |
Q |
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| T |
56069024 |
aaatgaaatagtgtatgacatgacattgtagagaagagacaaggatgatagggttcgtgtttgtctggagttaagtatatgctacc |
56069109 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 56068610 - 56068654
Alignment:
| Q |
1 |
ctaaataattgagtgactagttcgtgtccataaaagaatacaaat |
45 |
Q |
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| T |
56068610 |
ctaaataattgagggactagttcatgtccataaaagaatacaaat |
56068654 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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