View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2679_low_14 (Length: 234)

Name: NF2679_low_14
Description: NF2679
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2679_low_14
NF2679_low_14
[»] chr1 (2 HSPs)
chr1 (1-215)||(50275603-50275821)
chr1 (1-215)||(50279627-50279845)


Alignment Details
Target: chr1 (Bit Score: 194; Significance: 1e-105; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 1 - 215
Target Start/End: Complemental strand, 50275821 - 50275603
Alignment:
Q  1 cgaacttctcaaggtgattttgttcgaaaatattattacaattcttgatggaagccgtggataagagaaaagtttagatagtaaaatagaaatgatattt 100  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50275821 cgaacttctcaaggtgattttgtttgaaaatattattacaattcttgatggaagccgtggataagagaaaagtttagatagtaaaatagaaatgatattt 50275722  T
Q  101 agaatgaataagcggttacatcaagact----ttatagaggctaaaaacaaactaccactagtaattaactaacaaatatatacattttgttaactctta 196  Q
    |||||||||||||| |||||||||||||    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50275721 agaatgaataagcgattacatcaagactttatttatagaggctaaaaacaaactaccactagtaattaactaacaaatatatacattttgttaactctta 50275622  T
Q  197 cttctttctttgcatttgt 215  Q
    |||||||||||||||||||    
T  50275621 cttctttctttgcatttgt 50275603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 1 - 215
Target Start/End: Complemental strand, 50279845 - 50279627
Alignment:
Q  1 cgaacttctcaaggtgattttgttcgaaaatattattacaattcttgatggaagccgtggataagagaaaagtttagatagtaaaatagaaatgatattt 100  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50279845 cgaacttctcaaggtgattttgtttgaaaatattattacaattcttgatggaagccgtggataagagaaaagtttagatagtaaaatagaaatgatattt 50279746  T
Q  101 agaatgaataagcggttacatcaagact----ttatagaggctaaaaacaaactaccactagtaattaactaacaaatatatacattttgttaactctta 196  Q
    |||||||||||||| |||||||||||||    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50279745 agaatgaataagcgattacatcaagactttatttatagaggctaaaaacaaactaccactagtaattaactaacaaatatatacattttgttaactctta 50279646  T
Q  197 cttctttctttgcatttgt 215  Q
    |||||||||||||||||||    
T  50279645 cttctttctttgcatttgt 50279627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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