View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2679_low_3 (Length: 541)
Name: NF2679_low_3
Description: NF2679
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2679_low_3 |
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Alignment Details
Target: chr5 (Bit Score: 477; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 477; E-Value: 0
Query Start/End: Original strand, 29 - 535
Target Start/End: Original strand, 4678423 - 4678926
Alignment:
| Q |
29 |
agaagacacattaataatttgaaagtttcacctgttggagttggtcttatgggctatatgggaaacaaggtatgagatgtttcacattgaatcaggcttc |
128 |
Q |
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| T |
4678423 |
agaagacacattaataatttgaaagtttcacctgttggagttggtcttatgggctatatgggaaacaaggtatgagatgtttcacattgaatcaggcttc |
4678522 |
T |
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| Q |
129 |
ataattccacattaattgttaactagcttttataatcatttcagcattcattactagtatagtatgtgcaacatgcattttatgatcattaactattatt |
228 |
Q |
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| T |
4678523 |
ataattccacattaattgttaactagcttttataatcatttcagcattcattactagtatagtatgtgcaacatgcattttatgatcattaactatt--- |
4678619 |
T |
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| Q |
229 |
attagttatagtgaaaatcaccatgctgaataaaggtcgatcggtagaatccattgtatgaattcaacgatctacctttgtcagcaaggctaatgatgat |
328 |
Q |
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| T |
4678620 |
attagttatagtgaaaatcaccatgctgaataaaggtcgatcggtagaatccattgtatgaattcaacgatctacctttgtcagcaaggctaatgatgat |
4678719 |
T |
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| Q |
329 |
ccaaacttgtgcacttagtgaaagaatttgctcattttgacatatgatgcagggttctgtttcaatcagcatgtcactctttcagtcgcgtatgtgcttt |
428 |
Q |
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| T |
4678720 |
ccaaacttgtgcacttagtgaaagaatttgctcattttgacatatgatgcagggttctgtttcaatcagcatgtcactctttcagtcgcgtatgtgcttt |
4678819 |
T |
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| Q |
429 |
gtttgttcgcatctgacttctggtacaaaggatggagctgaacaaagacgaaactcagatgttaatgaaattctccgacgcacttgcttctcgtctgcct |
528 |
Q |
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| T |
4678820 |
gtttgttcgcatctgacctctggtacgaaggatggagctgaacaaagacgaaactcagatgttaatgaaattctccgacgcacttgcttctcgtctgtct |
4678919 |
T |
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| Q |
529 |
atgctac |
535 |
Q |
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| T |
4678920 |
ttgctac |
4678926 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 64; Significance: 1e-27; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 373 - 512
Target Start/End: Complemental strand, 40769488 - 40769349
Alignment:
| Q |
373 |
tgatgcagggttctgtttcaatcagcatgtcactctttcagtcgcgtatgtgctttgtttgttcgcatctgacttctggtacaaaggatggagctgaaca |
472 |
Q |
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| T |
40769488 |
tgatgcaggggtctgtttcagttagcatgtctgtttttcagtcacgtatgtgctttgtttgttcccatctggcttcaggtcagaaagatggagcggaaca |
40769389 |
T |
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| Q |
473 |
aagacgaaactcagatgttaatgaaattctccgacgcact |
512 |
Q |
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| T |
40769388 |
aagacgaaactcagatgtacatgaaattctacaacgcact |
40769349 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 375 - 517
Target Start/End: Complemental strand, 40776369 - 40776227
Alignment:
| Q |
375 |
atgcagggttctgtttcaatcagcatgtcactctttcagtcgcgtatgtgctttgtttgttcgcatctgacttctggtacaaaggatggagctgaacaaa |
474 |
Q |
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| T |
40776369 |
atgcagggatctgtttcagttagcatgtccgtttttcagtcacgcatgtgctttgtttgttctcatctggcttccggtcaaaaagatggagcggaacaaa |
40776270 |
T |
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| Q |
475 |
gacgaaactcagatgttaatgaaattctccgacgcacttgctt |
517 |
Q |
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|| | |||||||||||| | |||||||||| ||||||| |||| |
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| T |
40776269 |
gaaggaactcagatgttcacgaaattctccaacgcactcgctt |
40776227 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 45 - 100
Target Start/End: Complemental strand, 40776866 - 40776811
Alignment:
| Q |
45 |
atttgaaagtttcacctgttggagttggtcttatgggctatatgggaaacaaggta |
100 |
Q |
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| T |
40776866 |
atttgaaagtttctcctgttggagttggtcttatgggatacatgggaaacaaggta |
40776811 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 45 - 100
Target Start/End: Complemental strand, 40770154 - 40770099
Alignment:
| Q |
45 |
atttgaaagtttcacctgttggagttggtcttatgggctatatgggaaacaaggta |
100 |
Q |
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| T |
40770154 |
atttgaaagtttctcaagttggtgttggtcttatgggctacatgggaaacaaggta |
40770099 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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