View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2679_low_5 (Length: 488)
Name: NF2679_low_5
Description: NF2679
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2679_low_5 |
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Alignment Details
Target: chr7 (Bit Score: 381; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 381; E-Value: 0
Query Start/End: Original strand, 13 - 455
Target Start/End: Original strand, 48147905 - 48148341
Alignment:
| Q |
13 |
aatatggataagatggagtagtaattctgacgtagtgactggtgagcttctcttatctcttctattaaatgcataaagcatagcaataaaa-gtgcatta |
111 |
Q |
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| T |
48147905 |
aatatggataagatggagtagtaattctgacgtagtgactggtgagcttctcttatctcttctattaaatgcataaagcatagcaataaaaagtgcatta |
48148004 |
T |
|
| Q |
112 |
atcgttttaagacggcaccaacgctgannnnnnncgtttaaaagtaacaccaacacttgcttgaattttgaaggaccttgaaatgaatcaacacaacagg |
211 |
Q |
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| T |
48148005 |
atcgttttaagacggcaccaacgctgatttttttcgtttaaaagtcacaccaacacttgcttgaattttgaaggaccttgaaatgaatcaacacaacagg |
48148104 |
T |
|
| Q |
212 |
tgccataacataacaagtcaacgaatttgtgtgacaaccgacattttaatttagacacaatgaatgaatgcaaagcaccgaccaaattgaataaaggaaa |
311 |
Q |
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| T |
48148105 |
tgccataacataacaagtcaacgaatttgtgtgacaaccgacattttaatttagacacaatgaatgaatgcaaagcaccgaccaaattgaataaaggaaa |
48148204 |
T |
|
| Q |
312 |
tcaaggccaaatttaattttaagaaagcaataactactacattcattcattctacaaaaaagtcatcatatagcatctgagtgcacaagaaaaccagcac |
411 |
Q |
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| T |
48148205 |
tcaaggccaaatttaattttaagaaagcaataacta-------cattcattctacaaaaaagtcatcatatagcatctgagtgcacaagaaaaccagcac |
48148297 |
T |
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| Q |
412 |
aacatgcgttagttagtagcgttactaacataaaaacaataaat |
455 |
Q |
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| T |
48148298 |
aacatgcgttagttagtagcgttactaacataaaaacaaaaaat |
48148341 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 55; Significance: 2e-22; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 270 - 363
Target Start/End: Original strand, 47153177 - 47153270
Alignment:
| Q |
270 |
aatgaatgaatgcaaagcaccgaccaaattgaataaaggaaatcaaggccaaatttaattttaagaaagcaataactac-tacattcattcattc |
363 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||| |||| |||||||| ||| ||||||| | ||||||||||||| |
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| T |
47153177 |
aatgaatgaatgcaaagcaccgaccaaattgaataaaggaaatcaacaccaaa-ttaactttaagaatgcattaactacgttcattcattcattc |
47153270 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 270 - 312
Target Start/End: Complemental strand, 4174512 - 4174470
Alignment:
| Q |
270 |
aatgaatgaatgcaaagcaccgaccaaattgaataaaggaaat |
312 |
Q |
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| T |
4174512 |
aatgaatgaatgcaaagcaccgaccaaattgaatataggaaat |
4174470 |
T |
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