View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2679_low_8 (Length: 381)
Name: NF2679_low_8
Description: NF2679
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2679_low_8 |
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Alignment Details
Target: chr5 (Bit Score: 299; Significance: 1e-168; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 299; E-Value: 1e-168
Query Start/End: Original strand, 55 - 373
Target Start/End: Complemental strand, 568962 - 568644
Alignment:
| Q |
55 |
catttctcctttggccaaagtggaagaatgttttccactttctaaccctaaaccagcagcttcaactccaatcaatctcacatctatgtctgatagaaac |
154 |
Q |
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| T |
568962 |
catttctcctttggttaaagtggaagaatgttttccactttctaaccctaaaccagcagcttcaactccaatcaatctcacatctgtgtctgatagaaac |
568863 |
T |
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| Q |
155 |
tcatggaacatacctaaagcatttgaacctgttccaacacttgcaacaataatgtctggttttcctccccatttttcccatgcttgtttccttgtttctt |
254 |
Q |
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| T |
568862 |
tcatggaacatacctaaagcatttgaacctgttccaacacttgcaacaataatgtctggttttcctccccatttttcccatgcttgtttccttgtttctt |
568763 |
T |
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| Q |
255 |
tcccaatcactgactgaaactcacgtaccatggtgggacatggatgtggtcccaccgctgaacctgacaagtggtagctgttttccaagtctccaaccca |
354 |
Q |
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| T |
568762 |
tcccaatcactgactgaaactcacgtaccatggtgggacatggatgtggtcccaccgctgaacctgacaagtggtagctgttttccaggtctccaaccca |
568663 |
T |
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| Q |
355 |
acaacgaaaagcctatgat |
373 |
Q |
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| T |
568662 |
acaacgaaaagcctctgat |
568644 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 188 - 303
Target Start/End: Complemental strand, 20172542 - 20172427
Alignment:
| Q |
188 |
ccaacacttgcaacaataatgtctggttttcctccccatttttcccatgcttgtttccttgtttctttcccaatcactgactgaaactcacgtaccatgg |
287 |
Q |
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| T |
20172542 |
ccaacacatgctactagaatatctggcttccctccccatttttccaatgcttgctttcttgtttctttccctatcactgcatgaaactctcttaccatca |
20172443 |
T |
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| Q |
288 |
tgggacatggatgtgg |
303 |
Q |
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| T |
20172442 |
taggatatggatgtgg |
20172427 |
T |
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