View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2680_high_11 (Length: 250)

Name: NF2680_high_11
Description: NF2680
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2680_high_11
NF2680_high_11
[»] chr3 (15 HSPs)
chr3 (1-238)||(10376497-10376734)
chr3 (1-238)||(10364450-10364686)
chr3 (1-238)||(10076436-10076683)
chr3 (2-138)||(10434697-10434831)
chr3 (1-77)||(9838202-9838278)
chr3 (1-77)||(9849080-9849156)
chr3 (1-80)||(10579940-10580018)
chr3 (1-59)||(10505144-10505202)
chr3 (7-78)||(11768574-11768645)
chr3 (1-53)||(13160345-13160397)
chr3 (1-53)||(13170396-13170448)
chr3 (1-53)||(13332269-13332321)
chr3 (112-140)||(10194961-10194989)
chr3 (1-53)||(13289030-13289082)
chr3 (1-53)||(13343454-13343506)
[»] scaffold0083 (2 HSPs)
scaffold0083 (162-238)||(50561-50637)
scaffold0083 (1-53)||(50457-50509)
[»] chr8 (1 HSPs)
chr8 (2-53)||(44958331-44958382)
[»] chr2 (1 HSPs)
chr2 (1-66)||(26906249-26906314)
[»] chr5 (1 HSPs)
chr5 (8-53)||(19956982-19957027)
[»] scaffold0002 (2 HSPs)
scaffold0002 (1-53)||(136540-136592)
scaffold0002 (1-53)||(146591-146643)


Alignment Details
Target: chr3 (Bit Score: 234; Significance: 1e-129; HSPs: 15)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 1 - 238
Target Start/End: Original strand, 10376497 - 10376734
Alignment:
Q  1 ctgaacagttgcagagagaaaagcacctcctatcatagttgcagccatcttctgttgatcttgtaaaagcaaatcagcaactaaggtatggaagttgtag 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10376497 ctgaacagttgcagagagaaaagcacctcctatcatagttgcagccatcttctgttgatcttgtaaaagcaaatcagcaactaaggtatggaagttgtag 10376596  T
Q  101 ataatagtatggaattttgatggaaattaagagctatgaaagatttagggatagcagtaaggagcaaagactcaaagaagactcgcttgtgagtgaatgg 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10376597 ataatagtatggaattttgatggaaattaagagctatgaaagatttagggatagcagtaaggagcaaagactcaaagaagactcgcttgtgagtgaatgg 10376696  T
Q  201 ataacattaacagtgctgtttttgaatggttggaagtg 238  Q
    |||||| |||||||||||||||||||||||||||||||    
T  10376697 ataacactaacagtgctgtttttgaatggttggaagtg 10376734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 1 - 238
Target Start/End: Original strand, 10364450 - 10364686
Alignment:
Q  1 ctgaacagttgcagagagaaaagcacctcctatcatagttgcagccatcttctgttgatcttgtaaaagcaaatcagcaactaaggtatggaagttgtag 100  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||| |||||||| |||||||||||||||| || ||||||    
T  10364450 ctgaacagttgcagagagaaaagctcctcctatcatagttgcagccatcttctgttgatattgttaaagcaaaccagcaactaaggtatgaaacttgtag 10364549  T
Q  101 ataatagtatggaattttgatggaaattaagagctatgaaagatttagggatagcagtaaggagcaaagactcaaagaagactcgcttgtgagtgaatgg 200  Q
    |||||||||||||||||||||||||||||||||||||| |||||| ||||||| ||||||| ||||||||||||||||||||| |||||||| |||||||    
T  10364550 ataatagtatggaattttgatggaaattaagagctatg-aagattaagggataacagtaagtagcaaagactcaaagaagacttgcttgtgaatgaatgg 10364648  T
Q  201 ataacattaacagtgctgtttttgaatggttggaagtg 238  Q
    |||||| |||||||||||||||||||||||||||||||    
T  10364649 ataacactaacagtgctgtttttgaatggttggaagtg 10364686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 1 - 238
Target Start/End: Complemental strand, 10076683 - 10076436
Alignment:
Q  1 ctgaacagttgcagagagaaaagcacctcctatcatagttgcagccatcttctgttgatcttgtaaaagcaaatcagcaactaaggtatggaagttgtag 100  Q
    |||||||||||||  ||||||||||||||||||||||||||||||||||||| ||||||||| | |||||||| ||||||||||||||||||| ||||||    
T  10076683 ctgaacagttgcatggagaaaagcacctcctatcatagttgcagccatcttcagttgatcttattaaagcaaaccagcaactaaggtatggaacttgtag 10076584  T
Q  101 ataatagtatggaattttgatggaaattaagagctatgaaagatttagggatagca------gtaaggagc-----aaagactcaaagaagactcgcttg 189  Q
    | |||||||||||||||||||||||| ||||||||||| |||||| |||||||| |      ||| ||| |     ||||||||||||||||||||||||    
T  10076583 aaaatagtatggaattttgatggaaagtaagagctatg-aagattaagggatagaaactatggtatggatcttgttaaagactcaaagaagactcgcttg 10076485  T
Q  190 tgagtgaatggataacattaacagtgctgtttttgaatggttggaagtg 238  Q
    ||| ||||||||||||| |||||| ||||||||||| ||||||||||||    
T  10076484 tgaatgaatggataacactaacagcgctgtttttgagtggttggaagtg 10076436  T

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Target: chr3; HSP #4
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 2 - 138
Target Start/End: Original strand, 10434697 - 10434831
Alignment:
Q  2 tgaacagttgcagagagaaaagcacctcctatcatagttgcagccatcttctgttgatcttgtaaaagcaaatcagcaactaaggtatggaagttgtaga 101  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||  |||| |||| |||||||| ||||||| |||||||||||||||||||    
T  10434697 tgaacagttgcagagagaaaagctcctcctatcatagttgcagccatcttctaatgatattgttaaagcaaaccagcaacaaaggtatggaagttgtaga 10434796  T
Q  102 taatagtatggaattttgatggaaattaagagctatg 138  Q
    ||||||  | |||||||||||||||||||||||||||    
T  10434797 taatag--ttgaattttgatggaaattaagagctatg 10434831  T

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Target: chr3; HSP #5
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 1 - 77
Target Start/End: Complemental strand, 9838278 - 9838202
Alignment:
Q  1 ctgaacagttgcagagagaaaagcacctcctatcatagttgcagccatcttctgttgatcttgtaaaagcaaatcag 77  Q
    |||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  9838278 ctgaacagttgcagagagaaaagcgcctccaatcatagttgcagccatcttctgttgatcttgtaaaagcaaatcag 9838202  T

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Target: chr3; HSP #6
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 1 - 77
Target Start/End: Complemental strand, 9849156 - 9849080
Alignment:
Q  1 ctgaacagttgcagagagaaaagcacctcctatcatagttgcagccatcttctgttgatcttgtaaaagcaaatcag 77  Q
    |||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  9849156 ctgaacagttgcagagagaaaagcgcctccaatcatagttgcagccatcttctgttgatcttgtaaaagcaaatcag 9849080  T

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Target: chr3; HSP #7
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 1 - 80
Target Start/End: Complemental strand, 10580018 - 10579940
Alignment:
Q  1 ctgaacagttgcagagagaaaagcacctcctatcatagttgcagccatcttctgttgatcttgtaaaagcaaatcagcaa 80  Q
    |||||||||||||||||| ||||||||||| |||||||||||||||||||| ||||||| |||| |||||||| ||||||    
T  10580018 ctgaacagttgcagagaggaaagcacctccaatcatagttgcagccatcttgtgttgat-ttgttaaagcaaagcagcaa 10579940  T

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Target: chr3; HSP #8
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 1 - 59
Target Start/End: Complemental strand, 10505202 - 10505144
Alignment:
Q  1 ctgaacagttgcagagagaaaagcacctcctatcatagttgcagccatcttctgttgat 59  Q
    |||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||    
T  10505202 ctgaacagttgcagagagaaaagttcctcctatcatagttgcagccatcttctgttgat 10505144  T

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Target: chr3; HSP #9
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 7 - 78
Target Start/End: Complemental strand, 11768645 - 11768574
Alignment:
Q  7 agttgcagagagaaaagcacctcctatcatagttgcagccatcttctgttgatcttgtaaaagcaaatcagc 78  Q
    |||||| ||||||||||| ||||||||||||||||| ||||||||| ||||||||||| | | |||||||||    
T  11768645 agttgccgagagaaaagcgcctcctatcatagttgccgccatcttcagttgatcttgttagaccaaatcagc 11768574  T

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Target: chr3; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 13160397 - 13160345
Alignment:
Q  1 ctgaacagttgcagagagaaaagcacctcctatcatagttgcagccatcttct 53  Q
    ||||||||| |||||||||||||| ||||| | || |||||||||||||||||    
T  13160397 ctgaacagtagcagagagaaaagcccctcccaccaaagttgcagccatcttct 13160345  T

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Target: chr3; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 13170448 - 13170396
Alignment:
Q  1 ctgaacagttgcagagagaaaagcacctcctatcatagttgcagccatcttct 53  Q
    ||||||||| |||||||||||||| ||||| | || |||||||||||||||||    
T  13170448 ctgaacagtagcagagagaaaagcccctcccaccaaagttgcagccatcttct 13170396  T

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Target: chr3; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 13332321 - 13332269
Alignment:
Q  1 ctgaacagttgcagagagaaaagcacctcctatcatagttgcagccatcttct 53  Q
    ||||||||| |||||||||||||| ||||| | || |||||||||||||||||    
T  13332321 ctgaacagtagcagagagaaaagcccctcccaccaaagttgcagccatcttct 13332269  T

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Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 112 - 140
Target Start/End: Complemental strand, 10194989 - 10194961
Alignment:
Q  112 gaattttgatggaaattaagagctatgaa 140  Q
    |||||||||||||||||||||||||||||    
T  10194989 gaattttgatggaaattaagagctatgaa 10194961  T

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Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 13289082 - 13289030
Alignment:
Q  1 ctgaacagttgcagagagaaaagcacctcctatcatagttgcagccatcttct 53  Q
    ||||||||| |||||||||||||| ||||| | || |||||||||||| ||||    
T  13289082 ctgaacagtagcagagagaaaagctcctcccaccaaagttgcagccattttct 13289030  T

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Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 13343506 - 13343454
Alignment:
Q  1 ctgaacagttgcagagagaaaagcacctcctatcatagttgcagccatcttct 53  Q
    ||||||||| |||||||||||||| ||||| | || |||||||||||| ||||    
T  13343506 ctgaacagtagcagagagaaaagcccctcccaccaaagttgcagccattttct 13343454  T

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Target: scaffold0083 (Bit Score: 57; Significance: 7e-24; HSPs: 2)
Name: scaffold0083
Description:

Target: scaffold0083; HSP #1
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 162 - 238
Target Start/End: Original strand, 50561 - 50637
Alignment:
Q  162 gagcaaagactcaaagaagactcgcttgtgagtgaatggataacattaacagtgctgtttttgaatggttggaagtg 238  Q
    |||||| ||||||||||||||||| |||||| ||||||||||||| | |||||||||||||||||||||||||||||    
T  50561 gagcaatgactcaaagaagactcggttgtgaatgaatggataacactgacagtgctgtttttgaatggttggaagtg 50637  T

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Target: scaffold0083; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 50457 - 50509
Alignment:
Q  1 ctgaacagttgcagagagaaaagcacctcctatcatagttgcagccatcttct 53  Q
    |||||||||||||| ||||||||| ||||| ||||||| ||||||||||||||    
T  50457 ctgaacagttgcagtgagaaaagctcctccaatcatagctgcagccatcttct 50509  T

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Target: chr8 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 2 - 53
Target Start/End: Original strand, 44958331 - 44958382
Alignment:
Q  2 tgaacagttgcagagagaaaagcacctcctatcatagttgcagccatcttct 53  Q
    |||||||||||||| |||||||| ||||||||||||||||||||||||||||    
T  44958331 tgaacagttgcagatagaaaagctcctcctatcatagttgcagccatcttct 44958382  T

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Target: chr2 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 1 - 66
Target Start/End: Complemental strand, 26906314 - 26906249
Alignment:
Q  1 ctgaacagttgcagagagaaaagcacctcctatcatagttgcagccatcttctgttgatcttgtaa 66  Q
    ||||||| ||||||||||||||||  |||||||||||| |||||||||||||| |||| |||||||    
T  26906314 ctgaacaattgcagagagaaaagcttctcctatcatagctgcagccatcttctattgaacttgtaa 26906249  T

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Target: chr5 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 8 - 53
Target Start/End: Complemental strand, 19957027 - 19956982
Alignment:
Q  8 gttgcagagagaaaagcacctcctatcatagttgcagccatcttct 53  Q
    ||||| ||||||||||| |||||||||||||||||| |||||||||    
T  19957027 gttgctgagagaaaagctcctcctatcatagttgcaaccatcttct 19956982  T

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Target: scaffold0002 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 136540 - 136592
Alignment:
Q  1 ctgaacagttgcagagagaaaagcacctcctatcatagttgcagccatcttct 53  Q
    ||||||||| |||||||||||||| ||||| | || |||||||||||||||||    
T  136540 ctgaacagtagcagagagaaaagcccctcccaccaaagttgcagccatcttct 136592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 146591 - 146643
Alignment:
Q  1 ctgaacagttgcagagagaaaagcacctcctatcatagttgcagccatcttct 53  Q
    ||||||||| |||||||||||||| ||||| | || |||||||||||||||||    
T  146591 ctgaacagtagcagagagaaaagcccctcccaccaaagttgcagccatcttct 146643  T

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