View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2680_high_13 (Length: 246)
Name: NF2680_high_13
Description: NF2680
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2680_high_13 |
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| [»] chr1 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 183; Significance: 4e-99; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 183; E-Value: 4e-99
Query Start/End: Original strand, 32 - 246
Target Start/End: Complemental strand, 32555727 - 32555513
Alignment:
| Q |
32 |
ttaattaagttgtttatctgaatagtgcattagccaagttaaatatgaacttgtaaagtgtgttggtatgtgtttaataattgaatgttgtttgagatta |
131 |
Q |
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| T |
32555727 |
ttaattaagttgtttatccaaacagcgcattagccaagttaaatatgaacttgtaaagtgttttggtatgtgtttaataattgaatgttgtttgagatta |
32555628 |
T |
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| Q |
132 |
atcttatacctcttcttcatcttcttcttcatgattgccactagcagttctattcgtatctccaaaatcatcattctttgcaaaccttccgctaactcga |
231 |
Q |
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| T |
32555627 |
atcttatacctcttcttcatcttcttcttcatgattgccactagcagttctatttgtatctccaaaatcatcattctttgcaaatcttcctctaactcga |
32555528 |
T |
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| Q |
232 |
ggtctgctatcagcc |
246 |
Q |
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| T |
32555527 |
ggtctgctatcagcc |
32555513 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 190 - 230
Target Start/End: Complemental strand, 16922821 - 16922781
Alignment:
| Q |
190 |
tctccaaaatcatcattctttgcaaaccttccgctaactcg |
230 |
Q |
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| T |
16922821 |
tctccaaaatcatcattctttgcaaaccttcctctaactcg |
16922781 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 33823400 - 33823444
Alignment:
| Q |
1 |
gcttatgcataaacatttatagaaaaagcgtttaattaagttgtt |
45 |
Q |
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| T |
33823400 |
gcttatgcataaacatttatataataagcgtttaattaagttgtt |
33823444 |
T |
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