View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2680_high_15 (Length: 210)

Name: NF2680_high_15
Description: NF2680
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2680_high_15
NF2680_high_15
[»] chr4 (1 HSPs)
chr4 (10-108)||(3512598-3512696)
[»] chr1 (2 HSPs)
chr1 (8-108)||(32991135-32991235)
chr1 (133-162)||(32991081-32991110)
[»] chr2 (2 HSPs)
chr2 (10-108)||(31526866-31526964)
chr2 (126-162)||(31526982-31527018)


Alignment Details
Target: chr4 (Bit Score: 95; Significance: 1e-46; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 10 - 108
Target Start/End: Complemental strand, 3512696 - 3512598
Alignment:
Q  10 gcaaagggtaaatgtggaagatgacaaaaaagtggatctttcttccctctttctctgctaacttggagagagtcctaaaagtagtgggatccatgcctg 108  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  3512696 gcaaagggtaaatgtggaagatgacaaaaaagtggatctttcttccctctttctctgctaacttggagagagtcctaaaagtagtgggacccatgcctg 3512598  T

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Target: chr1 (Bit Score: 89; Significance: 4e-43; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 89; E-Value: 4e-43
Query Start/End: Original strand, 8 - 108
Target Start/End: Complemental strand, 32991235 - 32991135
Alignment:
Q  8 aagcaaagggtaaatgtggaagatgacaaaaaagtggatctttcttccctctttctctgctaacttggagagagtcctaaaagtagtgggatccatgcct 107  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||| ||||||||    
T  32991235 aagcaaagggtaaatgtggaagatgacaaaaaagtggatctttcttccctctttctctgctagtttggagagagtcctaaaagtagtgggacccatgcct 32991136  T
Q  108 g 108  Q
    |    
T  32991135 g 32991135  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 133 - 162
Target Start/End: Complemental strand, 32991110 - 32991081
Alignment:
Q  133 tgttgtaccaaacagaagaaatgttgcatt 162  Q
    ||||||||||||||||||||||||||||||    
T  32991110 tgttgtaccaaacagaagaaatgttgcatt 32991081  T

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Target: chr2 (Bit Score: 87; Significance: 7e-42; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 87; E-Value: 7e-42
Query Start/End: Original strand, 10 - 108
Target Start/End: Original strand, 31526866 - 31526964
Alignment:
Q  10 gcaaagggtaaatgtggaagatgacaaaaaagtggatctttcttccctctttctctgctaacttggagagagtcctaaaagtagtgggatccatgcctg 108  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||    
T  31526866 gcaaagggtaaatgcggaagatgacaaaaaagtggatctttcttccctctttctctgctaacttgtagagagtcctaaaagtagtgggacccatgcctg 31526964  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 126 - 162
Target Start/End: Original strand, 31526982 - 31527018
Alignment:
Q  126 aattatgtgttgtaccaaacagaagaaatgttgcatt 162  Q
    |||| |||| |||||||||||||||||||||||||||    
T  31526982 aattctgtgctgtaccaaacagaagaaatgttgcatt 31527018  T

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