View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2680_high_4 (Length: 519)
Name: NF2680_high_4
Description: NF2680
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2680_high_4 |
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Alignment Details
Target: chr1 (Bit Score: 479; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 479; E-Value: 0
Query Start/End: Original strand, 18 - 512
Target Start/End: Complemental strand, 47262453 - 47261959
Alignment:
| Q |
18 |
atttctacggtggagccaacggtgttgatcatcttacgccgccggtgtttgatcagatcgttgatggaacgttatggagtgtggtgaatactacggtgga |
117 |
Q |
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| T |
47262453 |
atttctacggtggagtcaacggtgttgatcatcctacgccgccggtgtttgatcagatcattgatggaacgttatggagtgtggtgaatactacggtgga |
47262354 |
T |
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| Q |
118 |
ttatgctaatggaaactcgagtttttatgaaggggtatttttggctgtggggaagtttatgagtttttgtatcgggtcgaatagttatacggattctgac |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47262353 |
ttatgctaatggaaactcgagtttttatgaaggggtatttttggctgtggggaagtttatgagtttttgtatcgggtcgaatagttatacggattctgac |
47262254 |
T |
|
| Q |
218 |
ccgtttgtttctgctttggagtttttgattcttggagattccttgtataataccactgattttaacaactttgctattggtttggttgctagaaatagct |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47262253 |
ccgtttgtttctgctttggagtttttgattcttggagattccttgtataataccactgattttaacaactttgctattggtttggttgctagaaatagct |
47262154 |
T |
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| Q |
318 |
ttggttactccggaccaagcataaggttagttggacttggacactgttttcttcaacttttgtcaagttttgatgatattaatctttatgtggttggtac |
417 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
47262153 |
ttggttactccggaccaagcataaggttagttggacttggacactgttttcttcaacttttgtcaagttttgatgatattaatctttatttggttggtac |
47262054 |
T |
|
| Q |
418 |
ttggtagatatatagaatatagatcattatcatttagttgtggttatactgtatctgtaaaatttcctaagtttttgttgtcctatcctatgcta |
512 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47262053 |
ttggtagatatatagaatatagatcattatcatttagttgtggttatactgtatctgtaaaatttcctaagtttttgttgtcctatcctatgcta |
47261959 |
T |
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