View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2680_high_6 (Length: 401)
Name: NF2680_high_6
Description: NF2680
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2680_high_6 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 338; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 338; E-Value: 0
Query Start/End: Original strand, 11 - 385
Target Start/End: Complemental strand, 10192850 - 10192476
Alignment:
| Q |
11 |
atcatcaccatgaaatgttttacaaacatgtgaaggtgtgaannnnnnnatcacaagtgaagcagagttcctccttctgaaatagatcaaatcctcttcg |
110 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10192850 |
atcatcaccatgaaatgttttacaaacatgtgaaggtgtgaatttttttatcacaagtgaagcagagttcctccttctgaaatagatcaaatcctcttcg |
10192751 |
T |
|
| Q |
111 |
ccttgttcttattagccacttctcctttagtactgattctgctgacataatttgttaccctactaatgttggtagcttggttgctaagagttccttcaca |
210 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10192750 |
ccttgttcttattagccacttctcctttagtactgattctgctgacataatttgttaccctactaatgttggtagcttggttgctaagagttccttcaca |
10192651 |
T |
|
| Q |
211 |
tgtccatgttgatcttcctggttcttgattaatgttctaaaggatattgtggggataatgtattgttgatattgatatatgcccaaatctgttttacatt |
310 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10192650 |
tgtccatgtagatcttcctggttcttgattaatgttctaaaggatattgtggggataatgtattgttgatattgatatatgcccaaatctgttttacatt |
10192551 |
T |
|
| Q |
311 |
tctttttctgtattttacatatctgttctcactattttagtttggaatagccgtggggtaagttggggcattttg |
385 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||||||| ||||| ||||||||||||||||||||||| |
|
|
| T |
10192550 |
tctttttctgtattttacatatctgttctctctattttagtttggtatagctgtggggtaagttggggcattttg |
10192476 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 79; Significance: 8e-37; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 79; E-Value: 8e-37
Query Start/End: Original strand, 81 - 237
Target Start/End: Original strand, 19460816 - 19460969
Alignment:
| Q |
81 |
ctccttctgaaatagatcaaatcctcttcgccttgttcttattagccacttctcctttagtactgattctgctgacataatttgttaccctactaatgtt |
180 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||| || ||||| | ||| |||||||||| ||||| ||||||||||||| | |||||| |
|
|
| T |
19460816 |
ctccttctgaaatagatcaaatcctcttccccttgttcttatcagtcacttat---ttattactgattctattgacagaatttgttaccctgccaatgtt |
19460912 |
T |
|
| Q |
181 |
ggtagcttggttgctaagagttccttcacatgtccatgttgatcttcctggttcttg |
237 |
Q |
| |
|
|||||||||||||| ||||||||||||||| || ||| ||||||||||||||||| |
|
|
| T |
19460913 |
ggtagcttggttgcggagagttccttcacatctctgtgtagatcttcctggttcttg |
19460969 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 274 - 385
Target Start/End: Original strand, 19461064 - 19461175
Alignment:
| Q |
274 |
tgttgatattgatatatgcccaaatctgttttacatttctttttctgtattttacatatctgttctcactattttagtttggaatagccgtggggtaagt |
373 |
Q |
| |
|
||||||||||||| |||| ||||||||||||||||||||||| ||||||||||||| | | ||||| |||||||||||| | ||||| ||||||||| | |
|
|
| T |
19461064 |
tgttgatattgatgtatgaacaaatctgttttacatttcttttcctgtattttacatttattttctctctattttagtttaggatagctgtggggtaaat |
19461163 |
T |
|
| Q |
374 |
tggggcattttg |
385 |
Q |
| |
|
|||||||||||| |
|
|
| T |
19461164 |
tggggcattttg |
19461175 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University