View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2680_low_1 (Length: 894)

Name: NF2680_low_1
Description: NF2680
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2680_low_1
NF2680_low_1
[»] chr7 (25 HSPs)
chr7 (14-704)||(10193160-10193859)
chr7 (703-894)||(10192774-10192965)
chr7 (327-406)||(41387473-41387552)
chr7 (327-407)||(30610887-30610967)
chr7 (337-400)||(40121706-40121769)
chr7 (327-407)||(422742-422822)
chr7 (337-400)||(257355-257418)
chr7 (336-407)||(14092264-14092335)
chr7 (336-407)||(14402282-14402353)
chr7 (329-400)||(28909977-28910048)
chr7 (337-398)||(43167983-43168044)
chr7 (327-387)||(3973103-3973163)
chr7 (337-400)||(41670821-41670884)
chr7 (327-398)||(41709961-41710032)
chr7 (327-397)||(23721086-23721156)
chr7 (335-392)||(14091997-14092054)
chr7 (335-392)||(14402015-14402072)
chr7 (336-404)||(32000769-32000837)
chr7 (327-407)||(46753070-46753150)
chr7 (337-400)||(1661279-1661342)
chr7 (337-400)||(1663693-1663755)
chr7 (347-393)||(39079724-39079770)
chr7 (327-407)||(28359026-28359107)
chr7 (343-400)||(41389265-41389322)
chr7 (327-407)||(46870256-46870337)
[»] chr1 (28 HSPs)
chr1 (245-481)||(19459575-19459820)
chr1 (14-178)||(19459372-19459535)
chr1 (330-400)||(41590316-41590386)
chr1 (327-399)||(19811100-19811172)
chr1 (337-400)||(8520181-8520244)
chr1 (337-400)||(17419740-17419803)
chr1 (337-400)||(31305664-31305727)
chr1 (329-400)||(33879866-33879937)
chr1 (329-400)||(33964318-33964389)
chr1 (329-399)||(45264608-45264678)
chr1 (327-400)||(6868076-6868149)
chr1 (329-382)||(14623152-14623205)
chr1 (703-756)||(19460615-19460668)
chr1 (337-400)||(19937131-19937194)
chr1 (337-400)||(20735475-20735538)
chr1 (333-400)||(34626862-34626929)
chr1 (337-400)||(43423232-43423295)
chr1 (327-396)||(51515657-51515727)
chr1 (327-400)||(12410348-12410421)
chr1 (330-407)||(40566347-40566424)
chr1 (359-416)||(41590604-41590661)
chr1 (328-416)||(18998655-18998743)
chr1 (327-407)||(33248411-33248491)
chr1 (327-407)||(33268583-33268663)
chr1 (329-400)||(2697419-2697490)
chr1 (329-400)||(4022213-4022284)
chr1 (327-399)||(12581432-12581505)
chr1 (327-400)||(13978528-13978601)
[»] chr8 (19 HSPs)
chr8 (327-400)||(30590391-30590464)
chr8 (337-400)||(18905809-18905872)
chr8 (327-416)||(38887044-38887133)
chr8 (327-406)||(26639054-26639133)
chr8 (329-400)||(31766946-31767017)
chr8 (327-400)||(23027593-23027666)
chr8 (337-400)||(20298604-20298667)
chr8 (337-400)||(21085236-21085299)
chr8 (329-400)||(23027916-23027987)
chr8 (337-400)||(36997119-36997182)
chr8 (329-400)||(44933169-44933240)
chr8 (337-400)||(21653279-21653343)
chr8 (337-400)||(21653756-21653820)
chr8 (327-398)||(28488422-28488493)
chr8 (329-387)||(3184004-3184062)
chr8 (328-400)||(15157026-15157098)
chr8 (335-400)||(40754395-40754461)
chr8 (335-400)||(22277475-22277540)
chr8 (327-400)||(34529930-34530003)
[»] chr5 (17 HSPs)
chr5 (327-400)||(4796301-4796374)
chr5 (327-400)||(31973522-31973595)
chr5 (337-400)||(13843650-13843713)
chr5 (337-400)||(13843966-13844029)
chr5 (337-399)||(20811407-20811469)
chr5 (329-400)||(873784-873855)
chr5 (337-400)||(27760344-27760407)
chr5 (329-400)||(28010204-28010275)
chr5 (337-399)||(20837762-20837824)
chr5 (343-400)||(1028181-1028238)
chr5 (327-400)||(24918107-24918180)
chr5 (329-400)||(37995722-37995793)
chr5 (338-400)||(27760029-27760091)
chr5 (327-400)||(15844312-15844385)
chr5 (327-400)||(24994015-24994088)
chr5 (327-400)||(28009885-28009958)
chr5 (348-400)||(17016181-17016233)
[»] chr2 (18 HSPs)
chr2 (346-407)||(3003988-3004049)
chr2 (337-400)||(3976559-3976622)
chr2 (329-400)||(15820189-15820260)
chr2 (337-400)||(43169195-43169258)
chr2 (327-396)||(18183409-18183478)
chr2 (327-400)||(26760914-26760987)
chr2 (328-400)||(18959505-18959577)
chr2 (337-400)||(3976243-3976306)
chr2 (337-400)||(3977091-3977154)
chr2 (337-400)||(18901952-18902015)
chr2 (337-400)||(21213973-21214036)
chr2 (337-400)||(43195737-43195800)
chr2 (327-379)||(21373926-21373978)
chr2 (340-400)||(23054282-23054342)
chr2 (329-400)||(5424844-5424915)
chr2 (337-400)||(17509062-17509125)
chr2 (337-400)||(21214289-21214352)
chr2 (338-407)||(11339777-11339846)
[»] chr3 (23 HSPs)
chr3 (327-399)||(662669-662741)
chr3 (327-416)||(25568440-25568529)
chr3 (337-400)||(4256187-4256250)
chr3 (337-400)||(44573279-44573342)
chr3 (337-400)||(13769379-13769442)
chr3 (329-396)||(24860152-24860219)
chr3 (337-400)||(41380677-41380740)
chr3 (337-400)||(43101459-43101522)
chr3 (337-400)||(45443233-45443296)
chr3 (337-400)||(50203945-50204008)
chr3 (337-400)||(54368992-54369055)
chr3 (327-400)||(14170087-14170160)
chr3 (327-400)||(34250440-34250513)
chr3 (337-394)||(44573908-44573965)
chr3 (329-400)||(3985718-3985789)
chr3 (337-400)||(4255463-4255526)
chr3 (341-400)||(27219286-27219345)
chr3 (327-407)||(39225106-39225190)
chr3 (332-395)||(54861473-54861536)
chr3 (337-400)||(44573595-44573655)
chr3 (327-407)||(51917823-51917903)
chr3 (337-400)||(34715543-34715606)
chr3 (343-400)||(48685405-48685463)
[»] chr4 (25 HSPs)
chr4 (337-400)||(991157-991220)
chr4 (337-400)||(50857965-50858028)
chr4 (337-400)||(50858281-50858344)
chr4 (329-400)||(53738296-53738367)
chr4 (337-400)||(53740135-53740198)
chr4 (331-396)||(30491043-30491108)
chr4 (329-400)||(15665097-15665169)
chr4 (337-400)||(990500-990563)
chr4 (337-396)||(990991-991050)
chr4 (337-400)||(45427340-45427403)
chr4 (337-400)||(52214568-52214631)
chr4 (335-400)||(43972306-43972371)
chr4 (328-396)||(26942679-26942747)
chr4 (328-411)||(52043155-52043238)
chr4 (329-396)||(56509554-56509621)
chr4 (329-399)||(43971984-43972054)
chr4 (327-376)||(44898834-44898883)
chr4 (343-400)||(45427024-45427081)
chr4 (327-407)||(48046299-48046380)
chr4 (328-400)||(26942959-26943031)
chr4 (337-400)||(29669451-29669513)
chr4 (337-400)||(29669766-29669828)
chr4 (337-400)||(29734514-29734577)
chr4 (337-400)||(32988358-32988421)
chr4 (329-400)||(36558554-36558625)
[»] chr6 (18 HSPs)
chr6 (337-400)||(10418426-10418489)
chr6 (337-400)||(24055197-24055260)
chr6 (327-397)||(9602078-9602148)
chr6 (327-396)||(1205956-1206025)
chr6 (343-400)||(1408970-1409027)
chr6 (327-415)||(16509719-16509808)
chr6 (327-399)||(1205639-1205711)
chr6 (332-394)||(130761-130824)
chr6 (337-400)||(19054446-19054509)
chr6 (337-398)||(21043871-21043932)
chr6 (337-398)||(21067147-21067208)
chr6 (337-398)||(21088938-21088999)
chr6 (329-398)||(32215853-32215922)
chr6 (344-400)||(10733526-10733582)
chr6 (337-400)||(1744930-1744993)
chr6 (329-400)||(12134571-12134642)
chr6 (337-400)||(19753692-19753755)
chr6 (334-396)||(31965-32027)


Alignment Details
Target: chr7 (Bit Score: 636; Significance: 0; HSPs: 25)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 636; E-Value: 0
Query Start/End: Original strand, 14 - 704
Target Start/End: Complemental strand, 10193859 - 10193160
Alignment:
Q  14 caaaggcctactactgtcaatttcccctgaaacatttcgtcttgtcctcaaaagggagaattgttttttacgaaagctttcccctttacatgagggaagc 113  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  10193859 caaaggcctactactgtcaatttcccctgaaacatttcgtcttgttctcaaaagggagaattgttttttacgaaagctttctcctttacatgagggaagc 10193760  T
Q  114 tgctcccagtgggttaaaagctctgctgcacttgtggagagtaatatgagattcagaatcttgctcgcttagattgtatttccgctcctctgttgaaact 213  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10193759 tgctcccagtgggttaaaagctctgctgcacttgtggagagtaatatgagattcagaatcttgctcgcttagattgtatttccgctcctctgttgaaact 10193660  T
Q  214 gatggtagtggactttgttctcttccttgccaaggaccttagtctttatgattgaattttgacatacaccctgttggaaattccgccttaattggtgttt 313  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10193659 gatggtagtggactttgttctcttccttgccaaggaccttagtctttatgattgaattttgacatacaccctgttggaaattccgccttaattggtgttt 10193560  T
Q  314 gccctagctgcctcatttg---------ggttgccttaattgcagcctccaactcctttattgtgttgggtgtgagggggtgggtttagtcccacaatgc 404  Q
    |||||||||||||||||||         |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||     
T  10193559 gccctagctgcctcatttgcggcatttgggttgccttaattgcagcctccaactcctttattgtgttgtgtgtgagggggtgggtttagtcccgcaatgt 10193460  T
Q  405 ctaaagacatgaactaaacagggcataggaagcttggacaatcttcaccttaaaagtcaatttttagggttgaccagttaagctgcacacaagcttcgtg 504  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||    
T  10193459 ctaaagacatgaactaaacagggcataggaagcttggacaatcttcaccttacaagtcaatttttagggttgaccagttaagctgcacacaagcttcatg 10193360  T
Q  505 tacttaacaagtcaatttttagttacatggtttttggtaagctatgtgtggtctacaccactgagggtgtacttaactaactgatcaagttagtggaata 604  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10193359 tacttaacaagtcaatttttagttacatggcttttggtaagctatgtgtggtctacaccactgagggtgtacttaactaactgatcaagttagtggaata 10193260  T
Q  605 agcttagttaatatgattccaaactgttggagtgttgactttagcgtgctgacatggccggtaggcttggtaaatattctgtcaaatttccaatccgtgt 704  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10193259 agcttagttaatatgattccaaactgttggagtgttgactttagcgtgctgacatggccggtaggcttggtaaatattctgtcaaatttccaatccgtgt 10193160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 126; E-Value: 2e-64
Query Start/End: Original strand, 703 - 894
Target Start/End: Complemental strand, 10192965 - 10192774
Alignment:
Q  703 gtaagccctactatgctttgaatggccaacttcaccattttctcattcaaagaattcaactccttcattttgctctagctnnnnnnnttctactccctca 802  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||       ||||||||||||     
T  10192965 gtaagccctactatgctttgaatggccaacttcaccattttctcattcaaagaactcaactccttcattttgctctagctcccccccttctactccctcg 10192866  T
Q  803 aattcttccttcacaatcatcaccatgcaatgttttacaaacctgtgtaggtgtgaannnnnnnatcccaagtgaagcagagttcctccttc 894  Q
    ||||||||||||||||||||||||||| |||||||||||||| |||| |||||||||       ||| ||||||||||||||||||||||||    
T  10192865 aattcttccttcacaatcatcaccatgaaatgttttacaaacatgtgaaggtgtgaatttttttatcacaagtgaagcagagttcctccttc 10192774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 327 - 406
Target Start/End: Original strand, 41387473 - 41387552
Alignment:
Q  327 catttgggttgccttaattgcagcctccaactcctttattgtgttgggtgtgagggggtgggtttagtcccacaatgcct 406  Q
    ||||||||||||||| |||||| |||||||| |||| |||||||| ||| ||| |||||||||||||||||||| |||||    
T  41387473 catttgggttgccttcattgcaacctccaacaccttcattgtgttaggtatgaaggggtgggtttagtcccacattgcct 41387552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 327 - 407
Target Start/End: Complemental strand, 30610967 - 30610887
Alignment:
Q  327 catttgggttgccttaattgcagcctccaactcctttattgtgttgggtgtgagggggtgggtttagtcccacaatgccta 407  Q
    ||||||||||||||| ||||||||||||||| |||| ||||||||||||| || ||||||| |||| || |||| ||||||    
T  30610967 catttgggttgccttcattgcagcctccaacaccttcattgtgttgggtgggaaggggtggatttaatctcacattgccta 30610887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 337 - 400
Target Start/End: Complemental strand, 40121769 - 40121706
Alignment:
Q  337 gccttaattgcagcctccaactcctttattgtgttgggtgtgagggggtgggtttagtcccaca 400  Q
    ||||||||||||||||||||| ||||||||||||||| | ||||||||||| |||||| |||||    
T  40121769 gccttaattgcagcctccaacacctttattgtgttggctttgagggggtggatttagttccaca 40121706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 327 - 407
Target Start/End: Complemental strand, 422822 - 422742
Alignment:
Q  327 catttgggttgccttaattgcagcctccaactcctttattgtgttgggtgtgagggggtgggtttagtcccacaatgccta 407  Q
    ||||||||||||||  |||||||| |||||| |||| |||||||||||||||| ||||||  |||| ||||||| ||||||    
T  422822 catttgggttgcctccattgcagcttccaacaccttcattgtgttgggtgtgaaggggtgactttaatcccacattgccta 422742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 337 - 400
Target Start/End: Complemental strand, 257418 - 257355
Alignment:
Q  337 gccttaattgcagcctccaactcctttattgtgttgggtgtgagggggtgggtttagtcccaca 400  Q
    ||||| ||||||||||||||| |||| |||||||||| | ||||||||||| ||||||||||||    
T  257418 gccttcattgcagcctccaacaccttcattgtgttggctttgagggggtggatttagtcccaca 257355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 336 - 407
Target Start/End: Complemental strand, 14092335 - 14092264
Alignment:
Q  336 tgccttaattgcagcctccaactcctttattgtgttgggtgtgagggggtgggtttagtcccacaatgccta 407  Q
    |||||||||| |||| |||| | |||| |||||| ||| |||||||||||||||||||||||||| ||||||    
T  14092335 tgccttaatttcagcttccatcaccttcattgtgctggatgtgagggggtgggtttagtcccacattgccta 14092264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 336 - 407
Target Start/End: Complemental strand, 14402353 - 14402282
Alignment:
Q  336 tgccttaattgcagcctccaactcctttattgtgttgggtgtgagggggtgggtttagtcccacaatgccta 407  Q
    |||||||||| |||| |||| | |||| |||||| ||| |||||||||||||||||||||||||| ||||||    
T  14402353 tgccttaatttcagcttccatcaccttcattgtgctggatgtgagggggtgggtttagtcccacattgccta 14402282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 329 - 400
Target Start/End: Original strand, 28909977 - 28910048
Alignment:
Q  329 tttgggttgccttaattgcagcctccaactcctttattgtgttgggtgtgagggggtgggtttagtcccaca 400  Q
    ||||| |||| || ||||||||||||||| |||| |||||||||| | ||||||||||| ||||||||||||    
T  28909977 tttggtttgctttcattgcagcctccaacaccttcattgtgttggctttgagggggtggatttagtcccaca 28910048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 337 - 398
Target Start/End: Complemental strand, 43168044 - 43167983
Alignment:
Q  337 gccttaattgcagcctccaactcctttattgtgttgggtgtgagggggtgggtttagtccca 398  Q
    ||||| ||||||||||||||| |||| |||||||||| | ||||||||||| ||||||||||    
T  43168044 gccttcattgcagcctccaacaccttcattgtgttggctttgagggggtggatttagtccca 43167983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 327 - 387
Target Start/End: Original strand, 3973103 - 3973163
Alignment:
Q  327 catttgggttgccttaattgcagcctccaactcctttattgtgttgggtgtgagggggtgg 387  Q
    ||||||||||||||| |||||||||| |||| |||| || ||||||||| |||||||||||    
T  3973103 catttgggttgccttcattgcagccttcaacaccttcatcgtgttgggtttgagggggtgg 3973163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 337 - 400
Target Start/End: Original strand, 41670821 - 41670884
Alignment:
Q  337 gccttaattgcagcctccaactcctttattgtgttgggtgtgagggggtgggtttagtcccaca 400  Q
    ||||| ||||||||||||||| || | |||||||||| | ||||||||||| ||||||||||||    
T  41670821 gccttcattgcagcctccaacaccctcattgtgttggctttgagggggtggatttagtcccaca 41670884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 327 - 398
Target Start/End: Original strand, 41709961 - 41710032
Alignment:
Q  327 catttgggttgccttaattgcagcctccaactcctttattgtgttgggtgtgagggggtgggtttagtccca 398  Q
    ||||| ||||| ||| |||||| |||||||| |||| |||||||||| | ||||||||||| ||||||||||    
T  41709961 catttaggttgtcttcattgcaacctccaacaccttcattgtgttggctttgagggggtggatttagtccca 41710032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 327 - 397
Target Start/End: Original strand, 23721086 - 23721156
Alignment:
Q  327 catttgggttgccttaattgcagcctccaactcctttattgtgttgggtgtgagggggtgggtttagtccc 397  Q
    ||||||||||||||| |||||||||||||||  | | ||||||||||   ||| |||||||||||||||||    
T  23721086 catttgggttgccttcattgcagcctccaacaacatcattgtgttggacttgaaggggtgggtttagtccc 23721156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 335 - 392
Target Start/End: Complemental strand, 14092054 - 14091997
Alignment:
Q  335 ttgccttaattgcagcctccaactcctttattgtgttgggtgtgagggggtgggttta 392  Q
    ||||||| ||||||||||||||| |||| |||||||||||||||| ||| | ||||||    
T  14092054 ttgccttcattgcagcctccaacaccttcattgtgttgggtgtgacgggttaggttta 14091997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 335 - 392
Target Start/End: Complemental strand, 14402072 - 14402015
Alignment:
Q  335 ttgccttaattgcagcctccaactcctttattgtgttgggtgtgagggggtgggttta 392  Q
    ||||||| ||||||||||||||| |||| |||||||||||||||| ||| | ||||||    
T  14402072 ttgccttcattgcagcctccaacaccttcattgtgttgggtgtgacgggttaggttta 14402015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 336 - 404
Target Start/End: Original strand, 32000769 - 32000837
Alignment:
Q  336 tgccttaattgcagcctccaactcctttattgtgttgggtgtgagggggtgggtttagtcccacaatgc 404  Q
    |||||| |||||||||| |||| |||| || ||||||| | ||||||| ||| ||||||||||||||||    
T  32000769 tgccttcattgcagccttcaacaccttcatggtgttggctttgaggggatggatttagtcccacaatgc 32000837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 327 - 407
Target Start/End: Original strand, 46753070 - 46753150
Alignment:
Q  327 catttgggttgccttaattgcagcctccaactcctttattgtgttgggtgtgagggggtgggtttagtcccacaatgccta 407  Q
    ||||||||||||||| || ||||||||||||   ||  ||||||||||||||| ||||| | |||||||| ||| ||||||    
T  46753070 catttgggttgccttcatcgcagcctccaacatgttccttgtgttgggtgtgaaggggtagatttagtccaacattgccta 46753150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 337 - 400
Target Start/End: Complemental strand, 1661342 - 1661279
Alignment:
Q  337 gccttaattgcagcctccaactcctttattgtgttgggtgtgagggggtgggtttagtcccaca 400  Q
    ||||| ||||||||||||||| |||| |||| ||||| | ||| ||||||| ||||||||||||    
T  1661342 gccttcattgcagcctccaacaccttcattgcgttggctttgacggggtggatttagtcccaca 1661279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 337 - 400
Target Start/End: Complemental strand, 1663755 - 1663693
Alignment:
Q  337 gccttaattgcagcctccaactcctttattgtgttgggtgtgagggggtgggtttagtcccaca 400  Q
    ||||| ||||||||||||||| |||| |||||||||| | ||| ||||||| ||||||||||||    
T  1663755 gccttcattgcagcctccaacaccttcattgtgttggctttga-ggggtggatttagtcccaca 1663693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 347 - 393
Target Start/End: Complemental strand, 39079770 - 39079724
Alignment:
Q  347 cagcctccaactcctttattgtgttgggtgtgagggggtgggtttag 393  Q
    ||||||||||| |||| |||||||||||||||| ||||||| |||||    
T  39079770 cagcctccaacaccttcattgtgttgggtgtgaaggggtggatttag 39079724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 327 - 407
Target Start/End: Original strand, 28359026 - 28359107
Alignment:
Q  327 catttgggttgccttaattgcagcctccaactcctttattgtgttgggtgtg-agggggtgggtttagtcccacaatgccta 407  Q
    |||||||||| |||| ||||||||||||||| |||| ||| | ||||||||| |  |||||| || ||||||||| ||||||    
T  28359026 catttgggtttccttcattgcagcctccaacaccttcattattttgggtgtgaaatgggtggattcagtcccacattgccta 28359107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 343 - 400
Target Start/End: Original strand, 41389265 - 41389322
Alignment:
Q  343 attgcagcctccaactcctttattgtgttgggtgtgagggggtgggtttagtcccaca 400  Q
    |||||||||  |||| |||| |||||||| ||||||| ||||||| ||||||||||||    
T  41389265 attgcagccatcaacaccttcattgtgttaggtgtgaaggggtggatttagtcccaca 41389322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 327 - 407
Target Start/End: Original strand, 46870256 - 46870337
Alignment:
Q  327 catttgggttgccttaattgcagcctccaactcctttattgtgttgggtgtga-gggggtgggtttagtcccacaatgccta 407  Q
    |||||||| |||| |  |||||||||||||| | || ||||| | |||||||| |||||||| |||||||||||| ||||||    
T  46870256 catttgggctgccatctttgcagcctccaacactttcattgtttagggtgtgaagggggtggatttagtcccacattgccta 46870337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 174; Significance: 4e-93; HSPs: 28)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 174; E-Value: 4e-93
Query Start/End: Original strand, 245 - 481
Target Start/End: Original strand, 19459575 - 19459820
Alignment:
Q  245 aaggaccttagtctttatgattgaattttgacatacaccctgttggaaattccgccttaattggtgtttgccctagctgcct---------catttgggt 335  Q
    |||||||| || ||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||         |||||||||    
T  19459575 aaggacctcagcctttatgattgaattttgacatacaccttgttggaaattccgccttaattggtgtctgccctagctgccttacttgcggcatttgggt 19459674  T
Q  336 tgccttaattgcagcctccaactcctttattgtgttgggtgtgagggggtgggtttagtcccacaatgcctaaagacatgaactaaacagggcataggaa 435  Q
    ||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||| |||||||||    
T  19459675 tgcctaaattgcagcctccaactccttcattgtgttgggtgtgagggggtgggtttagtcccacaatgcctaaagtcatgacctaaacagagcataggaa 19459774  T
Q  436 gcttggacaatcttcaccttaaaagtcaatttttagggttgaccag 481  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||    
T  19459775 gcttggacaatcttcaccttacaagtcaatttttagggttgaccag 19459820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 101; E-Value: 1e-49
Query Start/End: Original strand, 14 - 178
Target Start/End: Original strand, 19459372 - 19459535
Alignment:
Q  14 caaaggcctactactgtcaatttcccctgaaacatttcgtcttgtcctcaaaagggagaattgttttttacgaaagctttcccctttacatgagggaagc 113  Q
    ||||||| ||||||||||||||||||||||||  |||||| |||||||||||||||| ||||| |||| | | |||||||| ||||||||||||||||||    
T  19459372 caaaggcttactactgtcaatttcccctgaaatctttcgt-ttgtcctcaaaagggaaaattgcttttgatggaagctttcacctttacatgagggaagc 19459470  T
Q  114 tgctcccagtgggttaaaagctctgctgcacttgtggagagtaatatgagattcagaatcttgct 178  Q
    || |||||||| ||| ||||||||||||||||||||| | |||||||||||||||||||||||||    
T  19459471 tgttcccagtgcgttgaaagctctgctgcacttgtggggcgtaatatgagattcagaatcttgct 19459535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 330 - 400
Target Start/End: Complemental strand, 41590386 - 41590316
Alignment:
Q  330 ttgggttgccttaattgcagcctccaactcctttattgtgttgggtgtgagggggtgggtttagtcccaca 400  Q
    |||||||||||| ||||||||||||||| |||| ||||||| |||||||| |||||||||||||| |||||    
T  41590386 ttgggttgccttcattgcagcctccaacaccttcattgtgtcgggtgtgaaggggtgggtttagttccaca 41590316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 327 - 399
Target Start/End: Complemental strand, 19811172 - 19811100
Alignment:
Q  327 catttgggttgccttaattgcagcctccaactcctttattgtgttgggtgtgagggggtgggtttagtcccac 399  Q
    ||||||||||||||| ||||||||||||||||||||  ||||||||||||||| |  |||| |||||||||||    
T  19811172 catttgggttgccttcattgcagcctccaactccttcgttgtgttgggtgtgaagatgtggatttagtcccac 19811100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 337 - 400
Target Start/End: Complemental strand, 8520244 - 8520181
Alignment:
Q  337 gccttaattgcagcctccaactcctttattgtgttgggtgtgagggggtgggtttagtcccaca 400  Q
    ||||| ||||||||||||||| |||| |||||||||| | ||||||||||| ||||||||||||    
T  8520244 gccttcattgcagcctccaaccccttcattgtgttggctttgagggggtggatttagtcccaca 8520181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 337 - 400
Target Start/End: Original strand, 17419740 - 17419803
Alignment:
Q  337 gccttaattgcagcctccaactcctttattgtgttgggtgtgagggggtgggtttagtcccaca 400  Q
    ||||||||||||||||| ||| |||| |||||||||| | ||||||||||| ||||||||||||    
T  17419740 gccttaattgcagcctcaaacaccttcattgtgttggctttgagggggtggatttagtcccaca 17419803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 337 - 400
Target Start/End: Original strand, 31305664 - 31305727
Alignment:
Q  337 gccttaattgcagcctccaactcctttattgtgttgggtgtgagggggtgggtttagtcccaca 400  Q
    ||||| ||||||||||||||| |||| |||||||||| | ||||||||||| ||||||||||||    
T  31305664 gccttcattgcagcctccaacaccttcattgtgttggctttgagggggtggatttagtcccaca 31305727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 329 - 400
Target Start/End: Complemental strand, 33879937 - 33879866
Alignment:
Q  329 tttgggttgccttaattgcagcctccaactcctttattgtgttgggtgtgagggggtgggtttagtcccaca 400  Q
    ||||| ||||||| ||||||||||||||| |||| |||||||||| | |||| |||||| ||||||||||||    
T  33879937 tttggtttgccttcattgcagcctccaacaccttcattgtgttggctttgagagggtggatttagtcccaca 33879866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 329 - 400
Target Start/End: Original strand, 33964318 - 33964389
Alignment:
Q  329 tttgggttgccttaattgcagcctccaactcctttattgtgttgggtgtgagggggtgggtttagtcccaca 400  Q
    ||||| ||||||| ||||||||||||||| |||| |||||||||| | |||| |||||| ||||||||||||    
T  33964318 tttggtttgccttcattgcagcctccaacaccttcattgtgttggctttgagagggtggatttagtcccaca 33964389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 329 - 399
Target Start/End: Original strand, 45264608 - 45264678
Alignment:
Q  329 tttgggttgccttaattgcagcctccaactcctttattgtgttgggtgtgagggggtgggtttagtcccac 399  Q
    ||||| |||||||  |||||||||||||| |||| |||||||||| | ||||||||||| |||||||||||    
T  45264608 tttggtttgccttctttgcagcctccaacaccttcattgtgttggctttgagggggtggatttagtcccac 45264678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 327 - 400
Target Start/End: Original strand, 6868076 - 6868149
Alignment:
Q  327 catttgggttgccttaattgcagcctccaactcctttattgtgttgggtgtgagggggtgggtttagtcccaca 400  Q
    ||||||||||||| | | ||||||||||||| |||| ||| |||||||| ||| ||||||| ||||||||||||    
T  6868076 catttgggttgccctcactgcagcctccaacaccttcattttgttgggtttgaaggggtggatttagtcccaca 6868149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 329 - 382
Target Start/End: Original strand, 14623152 - 14623205
Alignment:
Q  329 tttgggttgccttaattgcagcctccaactcctttattgtgttgggtgtgaggg 382  Q
    ||||||||||||| ||||||||||||||| |||| |||||||||||||| ||||    
T  14623152 tttgggttgccttcattgcagcctccaacaccttcattgtgttgggtgtaaggg 14623205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 703 - 756
Target Start/End: Original strand, 19460615 - 19460668
Alignment:
Q  703 gtaagccctactatgctttgaatggccaacttcaccattttctcattcaaagaa 756  Q
    ||||||||||| |||||||||||| | |||||||||||| ||||||||||||||    
T  19460615 gtaagccctaccatgctttgaatgtctaacttcaccattctctcattcaaagaa 19460668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 337 - 400
Target Start/End: Complemental strand, 19937194 - 19937131
Alignment:
Q  337 gccttaattgcagcctccaactcctttattgtgttgggtgtgagggggtgggtttagtcccaca 400  Q
    |||||||||||| |||||||| |||| |||||||||| | ||| ||||||| ||||||||||||    
T  19937194 gccttaattgcatcctccaacaccttcattgtgttggctttgatggggtggatttagtcccaca 19937131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 337 - 400
Target Start/End: Original strand, 20735475 - 20735538
Alignment:
Q  337 gccttaattgcagcctccaactcctttattgtgttgggtgtgagggggtgggtttagtcccaca 400  Q
    ||||| ||||||||||||||| |||| |||||||||| | ||||||||||| |||| |||||||    
T  20735475 gccttcattgcagcctccaacaccttcattgtgttggctttgagggggtggatttaatcccaca 20735538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 333 - 400
Target Start/End: Complemental strand, 34626929 - 34626862
Alignment:
Q  333 ggttgccttaattgcagcctccaactcctttattgtgttgggtgtgagggggtgggtttagtcccaca 400  Q
    ||||||||| ||||||||||||||| |||| ||| |||||||||||| || |||| ||||||| ||||    
T  34626929 ggttgccttcattgcagcctccaacaccttcattctgttgggtgtgaaggagtggatttagtctcaca 34626862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 337 - 400
Target Start/End: Original strand, 43423232 - 43423295
Alignment:
Q  337 gccttaattgcagcctccaactcctttattgtgttgggtgtgagggggtgggtttagtcccaca 400  Q
    |||| |||||||||||||||| |||| |||||||||| | ||||||||||| |||| |||||||    
T  43423232 gcctaaattgcagcctccaacaccttcattgtgttggctttgagggggtggatttattcccaca 43423295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 327 - 396
Target Start/End: Original strand, 51515657 - 51515727
Alignment:
Q  327 catttgggttgccttaattgcagcctccaactcctttattgtgttgggtgtg-agggggtgggtttagtcc 396  Q
    ||||||| ||||||| ||||| ||||||||| |||| ||||||||||||||| | ||||||| ||||||||    
T  51515657 catttggattgccttcattgctgcctccaacaccttcattgtgttgggtgtgaaaggggtggatttagtcc 51515727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 327 - 400
Target Start/End: Original strand, 12410348 - 12410421
Alignment:
Q  327 catttgggttgccttaattgcagcctccaactcctttattgtgttgggtgtgagggggtgggtttagtcccaca 400  Q
    |||||||||| ||||  |||||||||||||| |||| || ||||||||||||| || || | ||||||||||||    
T  12410348 catttgggttacctttgttgcagcctccaacaccttcatcgtgttgggtgtgaaggagttgatttagtcccaca 12410421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 330 - 407
Target Start/End: Complemental strand, 40566424 - 40566347
Alignment:
Q  330 ttgggttgccttaattgcagcctccaactcctttattgtgttgggtgtgagggggtgggtttagtcccacaatgccta 407  Q
    |||||||||||| ||| |||| |||||| |||| |||||||||||||||| ||| ||| || ||||||| | ||||||    
T  40566424 ttgggttgccttcattacagcttccaacaccttcattgtgttgggtgtgaagggatggattcagtcccatattgccta 40566347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 359 - 416
Target Start/End: Complemental strand, 41590661 - 41590604
Alignment:
Q  359 cctttattgtgttgggtgtgagggggtgggtttagtcccacaatgcctaaagacatga 416  Q
    |||| |||||||||||||||||||||||  |||||||||||| |||||| ||| ||||    
T  41590661 ccttcattgtgttgggtgtgagggggtgaatttagtcccacattgcctagagatatga 41590604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 328 - 416
Target Start/End: Original strand, 18998655 - 18998743
Alignment:
Q  328 atttgggttgccttaattgcagcctccaactcctttattgtgttgggtgtgagggggtgggtttagtcccacaatgcctaaagacatga 416  Q
    |||||||||  ||| ||||||||| ||||| ||||   ||||||||||||||  |||||| |||||||||||| |||||| ||| ||||    
T  18998655 atttgggttttcttcattgcagccaccaacaccttcgatgtgttgggtgtgaaagggtggatttagtcccacattgcctagagatatga 18998743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 327 - 407
Target Start/End: Complemental strand, 33248491 - 33248411
Alignment:
Q  327 catttgggttgccttaattgcagcctccaactcctttattgtgttgggtgtgagggggtgggtttagtcccacaatgccta 407  Q
    |||| ||||||| |||||||||  ||||||| |||| |||||||||||||| |  |||||| ||||||| |||| ||||||    
T  33248491 cattcgggttgcattaattgcaatctccaacaccttcattgtgttgggtgttaacgggtggatttagtctcacattgccta 33248411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 327 - 407
Target Start/End: Complemental strand, 33268663 - 33268583
Alignment:
Q  327 catttgggttgccttaattgcagcctccaactcctttattgtgttgggtgtgagggggtgggtttagtcccacaatgccta 407  Q
    |||| ||||||| |||||||||  ||||||| |||| |||||||||||||| |  |||||| ||||||| |||| ||||||    
T  33268663 cattcgggttgcattaattgcaatctccaacaccttcattgtgttgggtgttaacgggtggatttagtctcacattgccta 33268583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 329 - 400
Target Start/End: Complemental strand, 2697490 - 2697419
Alignment:
Q  329 tttgggttgccttaattgcagcctccaactcctttattgtgttgggtgtgagggggtgggtttagtcccaca 400  Q
    ||||| ||| ||| ||||||||||||||| |||| ||||||  || | ||||||||||| ||||||||||||    
T  2697490 tttggtttgtcttcattgcagcctccaacaccttcattgtgacggctttgagggggtggatttagtcccaca 2697419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 329 - 400
Target Start/End: Complemental strand, 4022284 - 4022213
Alignment:
Q  329 tttgggttgccttaattgcagcctccaactcctttattgtgttgggtgtgagggggtgggtttagtcccaca 400  Q
    ||||| |||||||  | ||| |||||||| |||| |||||||||| | ||||||||||| ||||||||||||    
T  4022284 tttggtttgccttcgtcgcaacctccaacaccttcattgtgttggctttgagggggtggatttagtcccaca 4022213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 327 - 399
Target Start/End: Complemental strand, 12581505 - 12581432
Alignment:
Q  327 catttgggttgccttaattgcagcctccaactcctttattgtgttgggtgtg-agggggtgggtttagtcccac 399  Q
    |||||||||||||||  || |||| |||||| |||| ||||||||||||||| |  |||||| |||||||||||    
T  12581505 catttgggttgcctttgtttcagcttccaacaccttcattgtgttgggtgtgaaatgggtggatttagtcccac 12581432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 327 - 400
Target Start/End: Original strand, 13978528 - 13978601
Alignment:
Q  327 catttgggttgccttaattgcagcctccaactcctttattgtgttgggtgtgagggggtgggtttagtcccaca 400  Q
    |||||| |||||||| |||||| |||||||  | || |||||||||||||||| ||| ||  ||||||||||||    
T  13978528 catttgtgttgccttcattgcatcctccaatacgttcattgtgttgggtgtgaagggatgtctttagtcccaca 13978601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 50; Significance: 4e-19; HSPs: 19)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 327 - 400
Target Start/End: Original strand, 30590391 - 30590464
Alignment:
Q  327 catttgggttgccttaattgcagcctccaactcctttattgtgttgggtgtgagggggtgggtttagtcccaca 400  Q
    ||||||||||||||| ||||||||||||||| |||| |||||||| ||||||| ||||||| ||||||||||||    
T  30590391 catttgggttgccttcattgcagcctccaacaccttcattgtgtttggtgtgaaggggtggatttagtcccaca 30590464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 337 - 400
Target Start/End: Original strand, 18905809 - 18905872
Alignment:
Q  337 gccttaattgcagcctccaactcctttattgtgttgggtgtgagggggtgggtttagtcccaca 400  Q
    ||||||||||||||||||||| ||||||||||||||| | ||||||||||| ||||||||||||    
T  18905809 gccttaattgcagcctccaacacctttattgtgttggctttgagggggtggatttagtcccaca 18905872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 46; E-Value: 9e-17
Query Start/End: Original strand, 327 - 416
Target Start/End: Original strand, 38887044 - 38887133
Alignment:
Q  327 catttgggttgccttaattgcagcctccaactcctttattgtgttgggtgtgagggggtgggtttagtcccacaatgcctaaagacatga 416  Q
    |||||||||||||||  |||||||||||||| |||| |||||||||||||||| ||||| | |||| ||||||| |||||| ||| ||||    
T  38887044 catttgggttgccttcgttgcagcctccaacaccttcattgtgttgggtgtgaaggggttgatttaatcccacattgcctagagatatga 38887133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 327 - 406
Target Start/End: Original strand, 26639054 - 26639133
Alignment:
Q  327 catttgggttgccttaattgcagcctccaactcctttattgtgttgggtgtgagggggtgggtttagtcccacaatgcct 406  Q
    |||||||||| |||| ||||||| | ||||| |||| ||||||||| |||||||||||||| |||||||||||| |||||    
T  26639054 catttgggtttccttcattgcagtccccaacaccttcattgtgttgagtgtgagggggtggatttagtcccacattgcct 26639133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 329 - 400
Target Start/End: Original strand, 31766946 - 31767017
Alignment:
Q  329 tttgggttgccttaattgcagcctccaactcctttattgtgttgggtgtgagggggtgggtttagtcccaca 400  Q
    ||||| ||||||| ||||||||||||||| |||| |||||||||| | ||||||||||| ||||||||||||    
T  31766946 tttggtttgccttcattgcagcctccaaccccttcattgtgttggctttgagggggtggatttagtcccaca 31767017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 327 - 400
Target Start/End: Complemental strand, 23027666 - 23027593
Alignment:
Q  327 catttgggttgccttaattgcagcctccaactcctttattgtgttgggtgtgagggggtgggtttagtcccaca 400  Q
    ||||||| ||||||| ||||||||||| ||| |||| |||||||||| | ||||||||||| ||||||||||||    
T  23027666 catttggcttgccttcattgcagcctcaaacaccttcattgtgttggctttgagggggtggatttagtcccaca 23027593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 337 - 400
Target Start/End: Complemental strand, 20298667 - 20298604
Alignment:
Q  337 gccttaattgcagcctccaactcctttattgtgttgggtgtgagggggtgggtttagtcccaca 400  Q
    ||||| ||||||||||||||| |||| |||||||||| | ||||||||||| ||||||||||||    
T  20298667 gccttcattgcagcctccaacaccttcattgtgttggctttgagggggtggatttagtcccaca 20298604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 337 - 400
Target Start/End: Complemental strand, 21085299 - 21085236
Alignment:
Q  337 gccttaattgcagcctccaactcctttattgtgttgggtgtgagggggtgggtttagtcccaca 400  Q
    ||||| ||||||||||||||| |||| |||||||||| | ||||||||||| ||||||||||||    
T  21085299 gccttcattgcagcctccaacaccttcattgtgttggctttgagggggtggatttagtcccaca 21085236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 329 - 400
Target Start/End: Complemental strand, 23027987 - 23027916
Alignment:
Q  329 tttgggttgccttaattgcagcctccaactcctttattgtgttgggtgtgagggggtgggtttagtcccaca 400  Q
    ||||| ||||||| |||||||||| |||| |||| |||||||||| | ||||||||||| ||||||||||||    
T  23027987 tttggcttgccttcattgcagccttcaacaccttcattgtgttggctttgagggggtggatttagtcccaca 23027916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 337 - 400
Target Start/End: Original strand, 36997119 - 36997182
Alignment:
Q  337 gccttaattgcagcctccaactcctttattgtgttgggtgtgagggggtgggtttagtcccaca 400  Q
    ||||||||||||||||||||| |||| |||||||||| | |||||||||||  |||||||||||    
T  36997119 gccttaattgcagcctccaacaccttcattgtgttggctttgagggggtggaattagtcccaca 36997182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 329 - 400
Target Start/End: Complemental strand, 44933240 - 44933169
Alignment:
Q  329 tttgggttgccttaattgcagcctccaactcctttattgtgttgggtgtgagggggtgggtttagtcccaca 400  Q
    ||||||||||||| |||||| |||||||| |||| |||||||||||| ||| ||||||| ||||||| ||||    
T  44933240 tttgggttgccttcattgcaccctccaacaccttcattgtgttgggtttgaaggggtggatttagtctcaca 44933169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 337 - 400
Target Start/End: Original strand, 21653279 - 21653343
Alignment:
Q  337 gccttaattgcagcctccaactcctttattgtgttgggtgtga-gggggtgggtttagtcccaca 400  Q
    ||||||||||||||||||||| |||| |||||||||| | ||| |||||||| ||||||||||||    
T  21653279 gccttaattgcagcctccaacaccttcattgtgttggctttgaggggggtggatttagtcccaca 21653343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 337 - 400
Target Start/End: Original strand, 21653756 - 21653820
Alignment:
Q  337 gccttaattgcagcctccaactcctttattgtgttgggtgtga-gggggtgggtttagtcccaca 400  Q
    ||||||||||||||||||||| |||| |||||||||| | ||| |||||||| ||||||||||||    
T  21653756 gccttaattgcagcctccaacaccttcattgtgttggctttgaggggggtggatttagtcccaca 21653820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 327 - 398
Target Start/End: Complemental strand, 28488493 - 28488422
Alignment:
Q  327 catttgggttgccttaattgcagcctccaactcctttattgtgttgggtgtgagggggtgggtttagtccca 398  Q
    |||||| |||||||| ||||||||||  ||| |||| |||||||||||| ||| ||||||| ||||||||||    
T  28488493 catttgagttgccttcattgcagccttaaacaccttcattgtgttgggtttgaaggggtggatttagtccca 28488422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 329 - 387
Target Start/End: Complemental strand, 3184062 - 3184004
Alignment:
Q  329 tttgggttgccttaattgcagcctccaactcctttattgtgttgggtgtgagggggtgg 387  Q
    ||||| ||||||| ||||||||||||||| |||| |||||||||| | |||||||||||    
T  3184062 tttggtttgccttcattgcagcctccaacaccttcattgtgttggctttgagggggtgg 3184004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 328 - 400
Target Start/End: Original strand, 15157026 - 15157098
Alignment:
Q  328 atttgggttgccttaattgcagcctccaactcctttattgtgttgggtgtgagggggtgggtttagtcccaca 400  Q
    ||||||||| ||||||||||||||||||   | ||  |||||||||||||||  |||||| ||||||||||||    
T  15157026 atttgggttcccttaattgcagcctccattgcgttcgttgtgttgggtgtgaaagggtggatttagtcccaca 15157098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 335 - 400
Target Start/End: Original strand, 40754395 - 40754461
Alignment:
Q  335 ttgccttaattgcagcctccaactcctttattgtgttgggtgtga-gggggtgggtttagtcccaca 400  Q
    ||||||| ||||||||||||||| |||| |||||||||| | ||| ||||||||  |||||||||||    
T  40754395 ttgccttcattgcagcctccaacaccttcattgtgttggctttgaggggggtggacttagtcccaca 40754461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 335 - 400
Target Start/End: Original strand, 22277475 - 22277540
Alignment:
Q  335 ttgccttaattgcagcctccaactcctttattgtgttgggtgtgagggggtgggtttagtcccaca 400  Q
    ||||||| ||||||||||||||| | || ||| |||||| | ||||||||||  ||||||||||||    
T  22277475 ttgccttcattgcagcctccaacactttcattttgttggctttgagggggtgaatttagtcccaca 22277540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 327 - 400
Target Start/End: Original strand, 34529930 - 34530003
Alignment:
Q  327 catttgggttgccttaattgcagcctccaactcctttattgtgttgggtgtgagggggtgggtttagtcccaca 400  Q
    ||||||||||||||| |||  ||||||| |  |||| |||||||||||||| | |||| || ||||||||||||    
T  34529930 catttgggttgccttcatttaagcctcctataccttcattgtgttgggtgtaaaggggcggatttagtcccaca 34530003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 50; Significance: 4e-19; HSPs: 17)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 327 - 400
Target Start/End: Original strand, 4796301 - 4796374
Alignment:
Q  327 catttgggttgccttaattgcagcctccaactcctttattgtgttgggtgtgagggggtgggtttagtcccaca 400  Q
    ||||||||||||||| ||||||||||||||| |||| |||||||||||||||| ||||||| ||||||| ||||    
T  4796301 catttgggttgccttcattgcagcctccaacaccttcattgtgttgggtgtgaaggggtggatttagtcacaca 4796374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 46; E-Value: 9e-17
Query Start/End: Original strand, 327 - 400
Target Start/End: Complemental strand, 31973595 - 31973522
Alignment:
Q  327 catttgggttgccttaattgcagcctccaactcctttattgtgttgggtgtgagggggtgggtttagtcccaca 400  Q
    |||||| |||||||| ||||||||||||||| |||| ||||||||||||||||  |||||| ||||||||||||    
T  31973595 catttgagttgcctttattgcagcctccaacaccttcattgtgttgggtgtgaaagggtggatttagtcccaca 31973522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 337 - 400
Target Start/End: Original strand, 13843650 - 13843713
Alignment:
Q  337 gccttaattgcagcctccaactcctttattgtgttgggtgtgagggggtgggtttagtcccaca 400  Q
    ||||||||||||||||||||| |||| |||||||||| | ||||||||||| ||||||||||||    
T  13843650 gccttaattgcagcctccaacaccttcattgtgttggctttgagggggtggatttagtcccaca 13843713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 337 - 400
Target Start/End: Original strand, 13843966 - 13844029
Alignment:
Q  337 gccttaattgcagcctccaactcctttattgtgttgggtgtgagggggtgggtttagtcccaca 400  Q
    ||||||||||||||||||||| |||| |||||||||| | ||||||||||| ||||||||||||    
T  13843966 gccttaattgcagcctccaacaccttcattgtgttggctttgagggggtggatttagtcccaca 13844029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 337 - 399
Target Start/End: Original strand, 20811407 - 20811469
Alignment:
Q  337 gccttaattgcagcctccaactcctttattgtgttgggtgtgagggggtgggtttagtcccac 399  Q
    ||||||||||||||||||||| |||| |||||||||| | ||||||||||| |||||||||||    
T  20811407 gccttaattgcagcctccaacaccttcattgtgttggctttgagggggtggatttagtcccac 20811469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 329 - 400
Target Start/End: Complemental strand, 873855 - 873784
Alignment:
Q  329 tttgggttgccttaattgcagcctccaactcctttattgtgttgggtgtgagggggtgggtttagtcccaca 400  Q
    ||||| ||||||| |||||||| |||||| |||| |||||||||| | ||||||||||| ||||||||||||    
T  873855 tttggtttgccttcattgcagcttccaacaccttcattgtgttggctttgagggggtggatttagtcccaca 873784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 337 - 400
Target Start/End: Original strand, 27760344 - 27760407
Alignment:
Q  337 gccttaattgcagcctccaactcctttattgtgttgggtgtgagggggtgggtttagtcccaca 400  Q
    ||||| ||||||||||||||| |||| |||||||||| | ||||||||||| ||||||||||||    
T  27760344 gccttcattgcagcctccaacaccttcattgtgttggctttgagggggtggatttagtcccaca 27760407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 329 - 400
Target Start/End: Complemental strand, 28010275 - 28010204
Alignment:
Q  329 tttgggttgccttaattgcagcctccaactcctttattgtgttgggtgtgagggggtgggtttagtcccaca 400  Q
    ||||| ||||||| |||||||||| |||| |||| |||||||||| | ||||||||||| ||||||||||||    
T  28010275 tttggcttgccttcattgcagccttcaacaccttcattgtgttggctttgagggggtggatttagtcccaca 28010204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 337 - 399
Target Start/End: Original strand, 20837762 - 20837824
Alignment:
Q  337 gccttaattgcagcctccaactcctttattgtgttgggtgtgagggggtgggtttagtcccac 399  Q
    |||||||||||||| |||||| |||| |||||||||| | ||||||||||| |||||||||||    
T  20837762 gccttaattgcagcatccaacaccttcattgtgttggctttgagggggtggatttagtcccac 20837824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 343 - 400
Target Start/End: Complemental strand, 1028238 - 1028181
Alignment:
Q  343 attgcagcctccaactcctttattgtgttgggtgtgagggggtgggtttagtcccaca 400  Q
    ||||||||||||||| |||| |||||||||| | ||||||||||| ||||||||||||    
T  1028238 attgcagcctccaacaccttcattgtgttggctttgagggggtggatttagtcccaca 1028181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 327 - 400
Target Start/End: Original strand, 24918107 - 24918180
Alignment:
Q  327 catttgggttgccttaattgcagcctccaactcctttattgtgttgggtgtgagggggtgggtttagtcccaca 400  Q
    ||||||| ||||||| |||||| | |||||| |||| |||||||||| | ||||||||||| ||||||||||||    
T  24918107 catttggtttgccttcattgcaacttccaacaccttcattgtgttggctttgagggggtggatttagtcccaca 24918180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 329 - 400
Target Start/End: Complemental strand, 37995793 - 37995722
Alignment:
Q  329 tttgggttgccttaattgcagcctccaactcctttattgtgttgggtgtgagggggtgggtttagtcccaca 400  Q
    ||||| ||||||| ||| |||| |||||| |||| |||||||||| | ||||||||||| ||||||||||||    
T  37995793 tttggtttgccttcattccagcttccaacaccttcattgtgttggctttgagggggtggatttagtcccaca 37995722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 338 - 400
Target Start/End: Original strand, 27760029 - 27760091
Alignment:
Q  338 ccttaattgcagcctccaactcctttattgtgttgggtgtgagggggtgggtttagtcccaca 400  Q
    |||| ||||||||||||||| | || |||||||||| | ||||||||||| ||||||||||||    
T  27760029 ccttcattgcagcctccaacactttcattgtgttggctttgagggggtggatttagtcccaca 27760091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 327 - 400
Target Start/End: Complemental strand, 15844385 - 15844312
Alignment:
Q  327 catttgggttgccttaattgcagcctccaactcctttattgtgttgggtgtgagggggtgggtttagtcccaca 400  Q
    |||||||||| ||||  ||||| ||| |||| |||| ||||||||| |||||| ||||||| ||||||||||||    
T  15844385 catttgggttaccttcgttgcaacctacaacaccttcattgtgttgagtgtgaaggggtggatttagtcccaca 15844312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 327 - 400
Target Start/End: Original strand, 24994015 - 24994088
Alignment:
Q  327 catttgggttgccttaattgcagcctccaactcctttattgtgttgggtgtgagggggtgggtttagtcccaca 400  Q
    ||||||| || |||| |||||| | |||||| |||| |||||||||| | ||||||||||| ||||||||||||    
T  24994015 catttggtttaccttcattgcaacttccaacaccttcattgtgttggctttgagggggtggatttagtcccaca 24994088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 327 - 400
Target Start/End: Complemental strand, 28009958 - 28009885
Alignment:
Q  327 catttgggttgccttaattgcagcctccaactcctttattgtgttgggtgtgagggggtgggtttagtcccaca 400  Q
    ||||||| ||||||| ||||||||||| ||| ||||  ||||||||| | |||||| |||| ||||||||||||    
T  28009958 catttggcttgccttcattgcagcctcaaacaccttctttgtgttggctttgagggcgtggatttagtcccaca 28009885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 348 - 400
Target Start/End: Complemental strand, 17016233 - 17016181
Alignment:
Q  348 agcctccaactcctttattgtgttgggtgtgagggggtgggtttagtcccaca 400  Q
    |||||||||| |||| |||||||||| | ||||||||||| ||||||||||||    
T  17016233 agcctccaacaccttcattgtgttggctttgagggggtggatttagtcccaca 17016181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 50; Significance: 4e-19; HSPs: 18)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 346 - 407
Target Start/End: Complemental strand, 3004049 - 3003988
Alignment:
Q  346 gcagcctccaactcctttattgtgttgggtgtgagggggtgggtttagtcccacaatgccta 407  Q
    |||||||||||| |||| |||||||||||||||||||| |||||||||||||||||||||||    
T  3004049 gcagcctccaacaccttcattgtgttgggtgtgaggggatgggtttagtcccacaatgccta 3003988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 337 - 400
Target Start/End: Complemental strand, 3976622 - 3976559
Alignment:
Q  337 gccttaattgcagcctccaactcctttattgtgttgggtgtgagggggtgggtttagtcccaca 400  Q
    ||||||||||||||||||||| |||| |||||||||| | ||||||||||| ||||||||||||    
T  3976622 gccttaattgcagcctccaacaccttcattgtgttggctttgagggggtggatttagtcccaca 3976559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 329 - 400
Target Start/End: Complemental strand, 15820260 - 15820189
Alignment:
Q  329 tttgggttgccttaattgcagcctccaactcctttattgtgttgggtgtgagggggtgggtttagtcccaca 400  Q
    ||||| ||||||| ||||||||||||||| |||| |||||||||| | ||||||||||| ||||||||||||    
T  15820260 tttggtttgcctttattgcagcctccaacaccttcattgtgttggctttgagggggtggatttagtcccaca 15820189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 337 - 400
Target Start/End: Original strand, 43169195 - 43169258
Alignment:
Q  337 gccttaattgcagcctccaactcctttattgtgttgggtgtgagggggtgggtttagtcccaca 400  Q
    ||||||||||||||||||||| |||| |||||||||| | ||||||||||| ||||||||||||    
T  43169195 gccttaattgcagcctccaacaccttcattgtgttggctttgagggggtggatttagtcccaca 43169258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 327 - 396
Target Start/End: Original strand, 18183409 - 18183478
Alignment:
Q  327 catttgggttgccttaattgcagcctccaactcctttattgtgttgggtgtgagggggtgggtttagtcc 396  Q
    |||||| |||||||| ||||||||||||||| |||| |||||||||||||||| ||| ||| ||||||||    
T  18183409 catttgagttgccttcattgcagcctccaacaccttcattgtgttgggtgtgatgggatggatttagtcc 18183478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 327 - 400
Target Start/End: Complemental strand, 26760987 - 26760914
Alignment:
Q  327 catttgggttgccttaattgcagcctccaactcctttattgtgttgggtgtgagggggtgggtttagtcccaca 400  Q
    ||||||||||||||| || ||||| | |||| |||||||||||||| || ||| ||||||||||||||||||||    
T  26760987 catttgggttgccttgatggcagcattcaacacctttattgtgttgagtttgaaggggtgggtttagtcccaca 26760914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 328 - 400
Target Start/End: Original strand, 18959505 - 18959577
Alignment:
Q  328 atttgggttgccttaattgcagcctccaactcctttattgtgttgggtgtgagggggtgggtttagtcccaca 400  Q
    ||||||||| |||| ||||||||| ||| | |||| |||||| ||||||||||||||||||||||||| ||||    
T  18959505 atttgggttcccttcattgcagccaccagcgccttcattgtgctgggtgtgagggggtgggtttagtctcaca 18959577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 337 - 400
Target Start/End: Complemental strand, 3976306 - 3976243
Alignment:
Q  337 gccttaattgcagcctccaactcctttattgtgttgggtgtgagggggtgggtttagtcccaca 400  Q
    ||||||||||||||||||||| |||| ||| |||||| | ||||||||||| ||||||||||||    
T  3976306 gccttaattgcagcctccaacaccttcattatgttggctttgagggggtggatttagtcccaca 3976243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 337 - 400
Target Start/End: Complemental strand, 3977154 - 3977091
Alignment:
Q  337 gccttaattgcagcctccaactcctttattgtgttgggtgtgagggggtgggtttagtcccaca 400  Q
    ||||||||||||||||| ||| |||| |||||||||| | ||||||||||| ||||||||||||    
T  3977154 gccttaattgcagcctctaacaccttcattgtgttggctctgagggggtggatttagtcccaca 3977091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 337 - 400
Target Start/End: Complemental strand, 18902015 - 18901952
Alignment:
Q  337 gccttaattgcagcctccaactcctttattgtgttgggtgtgagggggtgggtttagtcccaca 400  Q
    ||||| ||||||||||||||| |||| |||||||||| | ||||||||||| ||||||||||||    
T  18902015 gccttcattgcagcctccaacaccttcattgtgttggctttgagggggtggatttagtcccaca 18901952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 337 - 400
Target Start/End: Complemental strand, 21214036 - 21213973
Alignment:
Q  337 gccttaattgcagcctccaactcctttattgtgttgggtgtgagggggtgggtttagtcccaca 400  Q
    ||||||||||| ||||||||| |||| |||||||||| | ||||||||||| ||||||||||||    
T  21214036 gccttaattgccgcctccaacaccttcattgtgttggctttgagggggtggatttagtcccaca 21213973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 337 - 400
Target Start/End: Original strand, 43195737 - 43195800
Alignment:
Q  337 gccttaattgcagcctccaactcctttattgtgttgggtgtgagggggtgggtttagtcccaca 400  Q
    ||||||||||||||||||||| |||| |||||||||| | ||||||||| | ||||||||||||    
T  43195737 gccttaattgcagcctccaacaccttcattgtgttggctttgagggggtagatttagtcccaca 43195800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 327 - 379
Target Start/End: Original strand, 21373926 - 21373978
Alignment:
Q  327 catttgggttgccttaattgcagcctccaactcctttattgtgttgggtgtga 379  Q
    |||||| |||||||| ||||||||||||||| || ||||||||||||||||||    
T  21373926 catttgtgttgccttcattgcagcctccaacaccattattgtgttgggtgtga 21373978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 340 - 400
Target Start/End: Original strand, 23054282 - 23054342
Alignment:
Q  340 ttaattgcagcctccaactcctttattgtgttgggtgtgagggggtgggtttagtcccaca 400  Q
    |||||||||||||||||| |||| | |||||||| | ||||||||||| ||||||||||||    
T  23054282 ttaattgcagcctccaacaccttcaatgtgttggctttgagggggtggatttagtcccaca 23054342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 329 - 400
Target Start/End: Complemental strand, 5424915 - 5424844
Alignment:
Q  329 tttgggttgccttaattgcagcctccaactcctttattgtgttgggtgtgagggggtgggtttagtcccaca 400  Q
    ||||| || |||| ||||||||||||||| |||| |||||||||  | |||| |||||||||||||||||||    
T  5424915 tttggttttccttcattgcagcctccaacaccttcattgtgttgcctttgagagggtgggtttagtcccaca 5424844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 337 - 400
Target Start/End: Original strand, 17509062 - 17509125
Alignment:
Q  337 gccttaattgcagcctccaactcctttattgtgttgggtgtgagggggtgggtttagtcccaca 400  Q
    ||||| ||||||||||||||| |||| |||||||||| | ||||||||||| ||||| ||||||    
T  17509062 gccttcattgcagcctccaacaccttcattgtgttggctttgagggggtggatttagccccaca 17509125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 337 - 400
Target Start/End: Complemental strand, 21214352 - 21214289
Alignment:
Q  337 gccttaattgcagcctccaactcctttattgtgttgggtgtgagggggtgggtttagtcccaca 400  Q
    ||||||||||| ||||||||  |||| |||||||||| | ||||||||||| ||||||||||||    
T  21214352 gccttaattgccgcctccaaaaccttcattgtgttggctttgagggggtggatttagtcccaca 21214289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 338 - 407
Target Start/End: Complemental strand, 11339846 - 11339777
Alignment:
Q  338 ccttaattgcagcctccaactcctttattgtgttgggtgtgagggggtgggtttagtcccacaatgccta 407  Q
    |||| ||||||||||||||| |||| |||||||| |||| ||  |||||| |||||||||||| ||||||    
T  11339846 cctttattgcagcctccaacaccttcattgtgttaggtgcgaaagggtggatttagtcccacactgccta 11339777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 49; Significance: 1e-18; HSPs: 23)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 327 - 399
Target Start/End: Original strand, 662669 - 662741
Alignment:
Q  327 catttgggttgccttaattgcagcctccaactcctttattgtgttgggtgtgagggggtgggtttagtcccac 399  Q
    ||||||||||||||| ||||||||||||||| ||||||||||||||||| ||| ||||| | |||||||||||    
T  662669 catttgggttgccttcattgcagcctccaacacctttattgtgttgggtttgaaggggtcgatttagtcccac 662741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 46; E-Value: 9e-17
Query Start/End: Original strand, 327 - 416
Target Start/End: Original strand, 25568440 - 25568529
Alignment:
Q  327 catttgggttgccttaattgcagcctccaactcctttattgtgttgggtgtgagggggtgggtttagtcccacaatgcctaaagacatga 416  Q
    ||||||||||||||  ||||||||||||||| ||||   |||||||||||||| |||||||||||||  ||||| |||||| ||||||||    
T  25568440 catttgggttgcctacattgcagcctccaacaccttctctgtgttgggtgtgaaggggtgggtttagcaccacattgcctagagacatga 25568529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 337 - 400
Target Start/End: Original strand, 4256187 - 4256250
Alignment:
Q  337 gccttaattgcagcctccaactcctttattgtgttgggtgtgagggggtgggtttagtcccaca 400  Q
    ||||| ||||||||||||||| ||||||||||||||| | ||||||||||| ||||||||||||    
T  4256187 gccttcattgcagcctccaacacctttattgtgttggctttgagggggtggatttagtcccaca 4256250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 337 - 400
Target Start/End: Original strand, 44573279 - 44573342
Alignment:
Q  337 gccttaattgcagcctccaactcctttattgtgttgggtgtgagggggtgggtttagtcccaca 400  Q
    ||||||||||||||||||||| |||| |||||||||| | ||||||||||| ||||||||||||    
T  44573279 gccttaattgcagcctccaacaccttcattgtgttggctttgagggggtggatttagtcccaca 44573342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 337 - 400
Target Start/End: Complemental strand, 13769442 - 13769379
Alignment:
Q  337 gccttaattgcagcctccaactcctttattgtgttgggtgtgagggggtgggtttagtcccaca 400  Q
    ||||| ||||||||||||||| |||| |||||||||| | ||||||||||| ||||||||||||    
T  13769442 gccttcattgcagcctccaacaccttcattgtgttggctttgagggggtggatttagtcccaca 13769379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 329 - 396
Target Start/End: Complemental strand, 24860219 - 24860152
Alignment:
Q  329 tttgggttgccttaattgcagcctccaactcctttattgtgttgggtgtgagggggtgggtttagtcc 396  Q
    ||||| ||||||| ||||||||||||||| |||| |||||||||| | ||||||||||| ||||||||    
T  24860219 tttggtttgccttcattgcagcctccaacaccttcattgtgttggctttgagggggtggatttagtcc 24860152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 337 - 400
Target Start/End: Original strand, 41380677 - 41380740
Alignment:
Q  337 gccttaattgcagcctccaactcctttattgtgttgggtgtgagggggtgggtttagtcccaca 400  Q
    ||||| ||||||||||||||| |||| |||||||||| | ||||||||||| ||||||||||||    
T  41380677 gccttcattgcagcctccaacaccttcattgtgttggctttgagggggtggatttagtcccaca 41380740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 337 - 400
Target Start/End: Complemental strand, 43101522 - 43101459
Alignment:
Q  337 gccttaattgcagcctccaactcctttattgtgttgggtgtgagggggtgggtttagtcccaca 400  Q
    ||||| ||||||||||||||| |||| |||||||||| | ||||||||||| ||||||||||||    
T  43101522 gccttcattgcagcctccaacaccttcattgtgttggctttgagggggtggatttagtcccaca 43101459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 337 - 400
Target Start/End: Original strand, 45443233 - 45443296
Alignment:
Q  337 gccttaattgcagcctccaactcctttattgtgttgggtgtgagggggtgggtttagtcccaca 400  Q
    ||||| ||||||||||||||| |||| |||||||||| | ||||||||||| ||||||||||||    
T  45443233 gccttcattgcagcctccaacaccttcattgtgttggctttgagggggtggatttagtcccaca 45443296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 337 - 400
Target Start/End: Complemental strand, 50204008 - 50203945
Alignment:
Q  337 gccttaattgcagcctccaactcctttattgtgttgggtgtgagggggtgggtttagtcccaca 400  Q
    ||||| ||||||||||||||| |||| |||||||||| | ||||||||||||||||||| ||||    
T  50204008 gccttcattgcagcctccaacaccttcattgtgttggctttgagggggtgggtttagtctcaca 50203945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 337 - 400
Target Start/End: Original strand, 54368992 - 54369055
Alignment:
Q  337 gccttaattgcagcctccaactcctttattgtgttgggtgtgagggggtgggtttagtcccaca 400  Q
    ||||| ||||||||||||||| |||| |||||||||| | ||||||||||| ||||||||||||    
T  54368992 gccttcattgcagcctccaacaccttcattgtgttggctttgagggggtggatttagtcccaca 54369055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 327 - 400
Target Start/End: Complemental strand, 14170160 - 14170087
Alignment:
Q  327 catttgggttgccttaattgcagcctccaactcctttattgtgttgggtgtgagggggtgggtttagtcccaca 400  Q
    ||||||| ||||||| ||||||||||||| | |||| |||||||||| | ||||||| ||| ||||||||||||    
T  14170160 catttggtttgccttcattgcagcctccatcaccttcattgtgttggctttgaggggctggatttagtcccaca 14170087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 327 - 400
Target Start/End: Complemental strand, 34250513 - 34250440
Alignment:
Q  327 catttgggttgccttaattgcagcctccaactcctttattgtgttgggtgtgagggggtgggtttagtcccaca 400  Q
    ||||||||||||||| ||||||||||||||| |||| |||||||| ||| ||| ||||||  ||| ||||||||    
T  34250513 catttgggttgccttcattgcagcctccaacaccttaattgtgttaggtttgaaggggtgaatttcgtcccaca 34250440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 337 - 394
Target Start/End: Original strand, 44573908 - 44573965
Alignment:
Q  337 gccttaattgcagcctccaactcctttattgtgttgggtgtgagggggtgggtttagt 394  Q
    ||||||||||||||||||||| |||| |||||||||| | ||||||||||| ||||||    
T  44573908 gccttaattgcagcctccaacaccttcattgtgttggctttgagggggtggatttagt 44573965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 329 - 400
Target Start/End: Original strand, 3985718 - 3985789
Alignment:
Q  329 tttgggttgccttaattgcagcctccaactcctttattgtgttgggtgtgagggggtgggtttagtcccaca 400  Q
    ||||| ||||||| || |||||||||||| |||| | |||||||| | ||||||||||| ||||||||||||    
T  3985718 tttggtttgccttcatagcagcctccaacaccttcactgtgttggctttgagggggtggatttagtcccaca 3985789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 337 - 400
Target Start/End: Original strand, 4255463 - 4255526
Alignment:
Q  337 gccttaattgcagcctccaactcctttattgtgttgggtgtgagggggtgggtttagtcccaca 400  Q
    ||||| |||| |||||||||| |||| |||||||||| | ||||||||||| ||||||||||||    
T  4255463 gccttcattgtagcctccaacaccttcattgtgttggctttgagggggtggatttagtcccaca 4255526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 341 - 400
Target Start/End: Original strand, 27219286 - 27219345
Alignment:
Q  341 taattgcagcctccaactcctttattgtgttgggtgtgagggggtgggtttagtcccaca 400  Q
    ||||||||||||||||| |||| || ||||||| | ||||||||||| ||||||||||||    
T  27219286 taattgcagcctccaacaccttcatcgtgttggctttgagggggtggatttagtcccaca 27219345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 327 - 407
Target Start/End: Complemental strand, 39225190 - 39225106
Alignment:
Q  327 catttgggttgccttaattgcagcctccaact----cctttattgtgttgggtgtgagggggtgggtttagtcccacaatgccta 407  Q
    ||||||||||||||| | |||||||||||||     |||| |||||||||||||||| || |||||||||||||| || ||||||    
T  39225190 catttgggttgccttcactgcagcctccaacatacaccttcattgtgttgggtgtgaaggcgtgggtttagtcccgcattgccta 39225106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 332 - 395
Target Start/End: Original strand, 54861473 - 54861536
Alignment:
Q  332 gggttgccttaattgcagcctccaactcctttattgtgttgggtgtgagggggtgggtttagtc 395  Q
    |||||| ||| ||||||||||||||| ||||  ||||||||||||||| ||||||| |||||||    
T  54861473 gggttgtcttcattgcagcctccaacaccttcgttgtgttgggtgtgaaggggtggatttagtc 54861536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 337 - 400
Target Start/End: Original strand, 44573595 - 44573655
Alignment:
Q  337 gccttaattgcagcctccaactcctttattgtgttgggtgtgagggggtgggtttagtcccaca 400  Q
    ||||||||||||||||||||| ||   |||||||||| | ||||||||||| ||||||||||||    
T  44573595 gccttaattgcagcctccaacacc---attgtgttggctttgagggggtggatttagtcccaca 44573655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 327 - 407
Target Start/End: Original strand, 51917823 - 51917903
Alignment:
Q  327 catttgggttgccttaattgcagcctccaactcctttattgtgttgggtgtgagggggtgggtttagtcccacaatgccta 407  Q
    ||||||||||||||| |||||| ||| |||| |||| ||| ||||| ||||||  |||||| |||||||| ||| ||||||    
T  51917823 catttgggttgccttcattgcaaccttcaacgccttcattatgttgagtgtgaaagggtggatttagtcctacattgccta 51917903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 337 - 400
Target Start/End: Complemental strand, 34715606 - 34715543
Alignment:
Q  337 gccttaattgcagcctccaactcctttattgtgttgggtgtgagggggtgggtttagtcccaca 400  Q
    ||||| || |||||||||||| |||| | |||||||| | ||||||||||| ||||||||||||    
T  34715606 gccttcatcgcagcctccaacaccttcactgtgttggctttgagggggtggatttagtcccaca 34715543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 343 - 400
Target Start/End: Complemental strand, 48685463 - 48685405
Alignment:
Q  343 attgcagcctccaactcctttattgtgttgggtgtga-gggggtgggtttagtcccaca 400  Q
    ||||||||||||||| |||| |||||||||| | ||| |||||||| ||||||||||||    
T  48685463 attgcagcctccaacaccttcattgtgttggctttgaggggggtggatttagtcccaca 48685405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 25)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 337 - 400
Target Start/End: Original strand, 991157 - 991220
Alignment:
Q  337 gccttaattgcagcctccaactcctttattgtgttgggtgtgagggggtgggtttagtcccaca 400  Q
    ||||||||||||||||||||| |||| |||||||||| | ||||||||||| ||||||||||||    
T  991157 gccttaattgcagcctccaacaccttcattgtgttggctttgagggggtggatttagtcccaca 991220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 337 - 400
Target Start/End: Original strand, 50857965 - 50858028
Alignment:
Q  337 gccttaattgcagcctccaactcctttattgtgttgggtgtgagggggtgggtttagtcccaca 400  Q
    ||||||||||||||||||||| |||| |||||||||| | ||||||||||| ||||||||||||    
T  50857965 gccttaattgcagcctccaacaccttcattgtgttggctttgagggggtggatttagtcccaca 50858028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 337 - 400
Target Start/End: Original strand, 50858281 - 50858344
Alignment:
Q  337 gccttaattgcagcctccaactcctttattgtgttgggtgtgagggggtgggtttagtcccaca 400  Q
    ||||||||||||||||||||| |||| |||||||||| | ||||||||||| ||||||||||||    
T  50858281 gccttaattgcagcctccaacaccttcattgtgttggctttgagggggtggatttagtcccaca 50858344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 329 - 400
Target Start/End: Complemental strand, 53738367 - 53738296
Alignment:
Q  329 tttgggttgccttaattgcagcctccaactcctttattgtgttgggtgtgagggggtgggtttagtcccaca 400  Q
    ||||| ||||||| ||||||||||||||| |||| |||||||||| | ||||||||||| ||||||||||||    
T  53738367 tttggtttgccttcattgcagcctccaacaccttcattgtgttggctttgagggggtggatttagtcccaca 53738296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 337 - 400
Target Start/End: Original strand, 53740135 - 53740198
Alignment:
Q  337 gccttaattgcagcctccaactcctttattgtgttgggtgtgagggggtgggtttagtcccaca 400  Q
    ||||||||||||||||||||| |||| |||||||||| | ||||||||||| ||||||||||||    
T  53740135 gccttaattgcagcctccaacaccttcattgtgttggctttgagggggtggatttagtcccaca 53740198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 331 - 396
Target Start/End: Complemental strand, 30491108 - 30491043
Alignment:
Q  331 tgggttgccttaattgcagcctccaactcctttattgtgttgggtgtgagggggtgggtttagtcc 396  Q
    ||||||||||| ||||||||||||||| |||| | |||||||||||||| ||||||| ||||||||    
T  30491108 tgggttgccttcattgcagcctccaacaccttcaatgtgttgggtgtgaaggggtggatttagtcc 30491043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 329 - 400
Target Start/End: Original strand, 15665097 - 15665169
Alignment:
Q  329 tttgggtt-gccttaattgcagcctccaactcctttattgtgttgggtgtgagggggtgggtttagtcccaca 400  Q
    |||||||| ||||| ||||||||||||||| |||| |||||||||| | ||||||||||| ||||||||||||    
T  15665097 tttgggttagccttcattgcagcctccaacaccttcattgtgttggctttgagggggtggatttagtcccaca 15665169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 337 - 400
Target Start/End: Original strand, 990500 - 990563
Alignment:
Q  337 gccttaattgcagcctccaactcctttattgtgttgggtgtgagggggtgggtttagtcccaca 400  Q
    ||||||||||||||||||||| |||| |||||||||| | ||||||||||  ||||||||||||    
T  990500 gccttaattgcagcctccaacaccttcattgtgttggctttgagggggtgaatttagtcccaca 990563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 337 - 396
Target Start/End: Original strand, 990991 - 991050
Alignment:
Q  337 gccttaattgcagcctccaactcctttattgtgttgggtgtgagggggtgggtttagtcc 396  Q
    ||||||||||||||||||||| |||| |||||||||| | ||||||||||| ||||||||    
T  990991 gccttaattgcagcctccaacaccttcattgtgttggctttgagggggtggatttagtcc 991050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 337 - 400
Target Start/End: Complemental strand, 45427403 - 45427340
Alignment:
Q  337 gccttaattgcagcctccaactcctttattgtgttgggtgtgagggggtgggtttagtcccaca 400  Q
    ||||| ||||||||||||||| |||| |||||||||| | ||||||||||| ||||||||||||    
T  45427403 gccttcattgcagcctccaacaccttcattgtgttggctttgagggggtggatttagtcccaca 45427340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 337 - 400
Target Start/End: Original strand, 52214568 - 52214631
Alignment:
Q  337 gccttaattgcagcctccaactcctttattgtgttgggtgtgagggggtgggtttagtcccaca 400  Q
    ||||||||||||||||||||| |||| |||||||||| | |||||||||||  |||||||||||    
T  52214568 gccttaattgcagcctccaacaccttcattgtgttggctttgagggggtggaattagtcccaca 52214631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 335 - 400
Target Start/End: Original strand, 43972306 - 43972371
Alignment:
Q  335 ttgccttaattgcagcctccaactcctttattgtgttgggtgtgagggggtgggtttagtcccaca 400  Q
    ||||||| ||||||||||||||| |||| |||||||||| | ||||||||||  ||||||||||||    
T  43972306 ttgccttcattgcagcctccaacaccttcattgtgttggttttgagggggtgaatttagtcccaca 43972371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 328 - 396
Target Start/End: Complemental strand, 26942747 - 26942679
Alignment:
Q  328 atttgggttgccttaattgcagcctccaactcctttattgtgttgggtgtgagggggtgggtttagtcc 396  Q
    |||||||||| ||| |||||| |||||||| | || |||||||||||||||| ||||||| ||||||||    
T  26942747 atttgggttgtcttcattgcaacctccaacacattcattgtgttgggtgtgaaggggtggatttagtcc 26942679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 328 - 411
Target Start/End: Complemental strand, 52043238 - 52043155
Alignment:
Q  328 atttgggttgccttaattgcagcctccaactcctttattgtgttgggtgtgagggggtgggtttagtcccacaatgcctaaaga 411  Q
    ||||| |||| ||| ||||||||||||||| |||| ||||| | |||||||| ||||||| ||||||| |||| |||| |||||    
T  52043238 atttgtgttgtcttcattgcagcctccaacaccttcattgtatcgggtgtgaaggggtggatttagtctcacattgccaaaaga 52043155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 329 - 396
Target Start/End: Original strand, 56509554 - 56509621
Alignment:
Q  329 tttgggttgccttaattgcagcctccaactcctttattgtgttgggtgtgagggggtgggtttagtcc 396  Q
    ||||| ||||||| |||||||| |||||| |||| |||||||||| | ||||||||||| ||||||||    
T  56509554 tttggtttgccttcattgcagcttccaacaccttcattgtgttggctttgagggggtggatttagtcc 56509621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 329 - 399
Target Start/End: Original strand, 43971984 - 43972054
Alignment:
Q  329 tttgggttgccttaattgcagcctccaactcctttattgtgttgggtgtgagggggtgggtttagtcccac 399  Q
    ||||| || |||| ||||||||||||||| |||| |||||||||| | | ||||||||| |||||||||||    
T  43971984 tttggtttaccttcattgcagcctccaacaccttcattgtgttggctttaagggggtggatttagtcccac 43972054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 327 - 376
Target Start/End: Complemental strand, 44898883 - 44898834
Alignment:
Q  327 catttgggttgccttaattgcagcctccaactcctttattgtgttgggtg 376  Q
    |||||||| |||||| ||||||||||||||| |||| |||||||||||||    
T  44898883 catttgggctgccttcattgcagcctccaacaccttcattgtgttgggtg 44898834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 343 - 400
Target Start/End: Complemental strand, 45427081 - 45427024
Alignment:
Q  343 attgcagcctccaactcctttattgtgttgggtgtgagggggtgggtttagtcccaca 400  Q
    ||||||||||||||| |||| |||||||||| | ||||||||||| ||||| ||||||    
T  45427081 attgcagcctccaacaccttcattgtgttggctttgagggggtggatttagccccaca 45427024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 327 - 407
Target Start/End: Original strand, 48046299 - 48046380
Alignment:
Q  327 catttgggttgccttaattgcagcctccaactcctttattgtgttgggtgtg-agggggtgggtttagtcccacaatgccta 407  Q
    |||| |||||||||| |||||| |||||||| |||| | | ||||||||||| | ||||||| |||||||||||| ||||||    
T  48046299 cattggggttgccttcattgcaacctccaacaccttcactatgttgggtgtgaaaggggtggatttagtcccacattgccta 48046380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 328 - 400
Target Start/End: Complemental strand, 26943031 - 26942959
Alignment:
Q  328 atttgggttgccttaattgcagcctccaactcctttattgtgttgggtgtgagggggtgggtttagtcccaca 400  Q
    |||||| ||| ||| |||||||||| |||| ||||||||||||||||||||| | ||||  ||||||| ||||    
T  26943031 atttggattgtcttcattgcagccttcaacacctttattgtgttgggtgtgaagaggtgaatttagtctcaca 26942959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 337 - 400
Target Start/End: Complemental strand, 29669513 - 29669451
Alignment:
Q  337 gccttaattgcagcctccaactcctttattgtgttgggtgtgagggggtgggtttagtcccaca 400  Q
    ||||| ||||||||||||||| |||| |||||||||| | ||| ||||||| ||||||||||||    
T  29669513 gccttcattgcagcctccaacaccttcattgtgttggctttga-ggggtggatttagtcccaca 29669451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 337 - 400
Target Start/End: Complemental strand, 29669828 - 29669766
Alignment:
Q  337 gccttaattgcagcctccaactcctttattgtgttgggtgtgagggggtgggtttagtcccaca 400  Q
    ||||| ||||||||||||||| |||| |||||||||| | ||| ||||||| ||||||||||||    
T  29669828 gccttcattgcagcctccaacaccttcattgtgttggctttga-ggggtggatttagtcccaca 29669766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 337 - 400
Target Start/End: Original strand, 29734514 - 29734577
Alignment:
Q  337 gccttaattgcagcctccaactcctttattgtgttgggtgtgagggggtgggtttagtcccaca 400  Q
    ||||| ||||||||||||||| |||| |||||||||  | ||||||||||  ||||||||||||    
T  29734514 gccttcattgcagcctccaacaccttcattgtgttgactttgagggggtgaatttagtcccaca 29734577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 337 - 400
Target Start/End: Complemental strand, 32988421 - 32988358
Alignment:
Q  337 gccttaattgcagcctccaactcctttattgtgttgggtgtgagggggtgggtttagtcccaca 400  Q
    ||||| ||||||||| ||||| |||| |||||||||| | ||||| ||||| ||||||||||||    
T  32988421 gccttcattgcagcccccaacaccttcattgtgttggctttgaggtggtggatttagtcccaca 32988358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 329 - 400
Target Start/End: Complemental strand, 36558625 - 36558554
Alignment:
Q  329 tttgggttgccttaattgcagcctccaactcctttattgtgttgggtgtgagggggtgggtttagtcccaca 400  Q
    ||||| ||||||| || ||| |||||||| |||| | |||||||| | ||||||||||| ||||||||||||    
T  36558625 tttggtttgccttcatagcaacctccaacaccttcactgtgttggctttgagggggtggatttagtcccaca 36558554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 18)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 337 - 400
Target Start/End: Complemental strand, 10418489 - 10418426
Alignment:
Q  337 gccttaattgcagcctccaactcctttattgtgttgggtgtgagggggtgggtttagtcccaca 400  Q
    ||||| ||||||||||||||| |||| |||||||||| | ||||||||||| ||||||||||||    
T  10418489 gccttcattgcagcctccaacaccttcattgtgttggctttgagggggtggatttagtcccaca 10418426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 337 - 400
Target Start/End: Complemental strand, 24055260 - 24055197
Alignment:
Q  337 gccttaattgcagcctccaactcctttattgtgttgggtgtgagggggtgggtttagtcccaca 400  Q
    ||||| ||||||||||||||| |||| |||||||||| | ||||||||||| ||||||||||||    
T  24055260 gccttcattgcagcctccaacaccttcattgtgttggctttgagggggtggatttagtcccaca 24055197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 327 - 397
Target Start/End: Complemental strand, 9602148 - 9602078
Alignment:
Q  327 catttgggttgccttaattgcagcctccaactcctttattgtgttgggtgtgagggggtgggtttagtccc 397  Q
    ||||||| ||||||| ||| |||| |||||| |||| |||||||||||||||| ||||||| |||||||||    
T  9602148 catttggattgccttcattccagcttccaacaccttcattgtgttgggtgtgaaggggtggatttagtccc 9602078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 327 - 396
Target Start/End: Complemental strand, 1206025 - 1205956
Alignment:
Q  327 catttgggttgccttaattgcagcctccaactcctttattgtgttgggtgtgagggggtgggtttagtcc 396  Q
    ||||||||||||||| ||||||||||||| | |||| || ||||| ||||||| ||||||| ||||||||    
T  1206025 catttgggttgccttcattgcagcctccagcaccttcatcgtgttaggtgtgaaggggtggatttagtcc 1205956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 343 - 400
Target Start/End: Original strand, 1408970 - 1409027
Alignment:
Q  343 attgcagcctccaactcctttattgtgttgggtgtgagggggtgggtttagtcccaca 400  Q
    ||||||||||||||| |||| |||||||||| | ||||||||||| ||||||||||||    
T  1408970 attgcagcctccaacaccttcattgtgttggctttgagggggtggatttagtcccaca 1409027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 327 - 415
Target Start/End: Original strand, 16509719 - 16509808
Alignment:
Q  327 catttgggttgccttaattgcagcctccaactcctttatt-gtgttgggtgtgagggggtgggtttagtcccacaatgcctaaagacatg 415  Q
    ||||||||||||||| |||||||| | |||| |||| ||| ||| ||| |||||  |||||| |||||||||||| ||||||||||||||    
T  16509719 catttgggttgccttcattgcagctttcaacgccttcatttgtgatggatgtgaacgggtggatttagtcccacattgcctaaagacatg 16509808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 327 - 399
Target Start/End: Complemental strand, 1205711 - 1205639
Alignment:
Q  327 catttgggttgccttaattgcagcctccaactcctttattgtgttgggtgtgagggggtgggtttagtcccac 399  Q
    |||||||||| |||| |||||||||| |||| | || |||||||||||||||| ||||||| || ||||||||    
T  1205711 catttgggtttccttcattgcagcctacaacactttcattgtgttgggtgtgaaggggtggattcagtcccac 1205639  T

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Target: chr6; HSP #8
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 332 - 394
Target Start/End: Complemental strand, 130824 - 130761
Alignment:
Q  332 gggttgccttaattgcagcctccaact-cctttattgtgttgggtgtgagggggtgggtttagt 394  Q
    |||||||||| |||||||||||||||  |||| |||||||||||||||| ||||||| ||||||    
T  130824 gggttgccttcattgcagcctccaacaaccttcattgtgttgggtgtgaaggggtggatttagt 130761  T

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Target: chr6; HSP #9
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 337 - 400
Target Start/End: Original strand, 19054446 - 19054509
Alignment:
Q  337 gccttaattgcagcctccaactcctttattgtgttgggtgtgagggggtgggtttagtcccaca 400  Q
    ||||| ||||||||||||||| |||| |||||||||| | |||||||||||  |||||||||||    
T  19054446 gccttcattgcagcctccaacaccttcattgtgttggctttgagggggtggaattagtcccaca 19054509  T

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Target: chr6; HSP #10
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 337 - 398
Target Start/End: Complemental strand, 21043932 - 21043871
Alignment:
Q  337 gccttaattgcagcctccaactcctttattgtgttgggtgtgagggggtgggtttagtccca 398  Q
    ||||| ||||||||||||||| |||| |||||||| | | ||||||||||| ||||||||||    
T  21043932 gccttcattgcagcctccaacaccttcattgtgtttgctttgagggggtggatttagtccca 21043871  T

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Target: chr6; HSP #11
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 337 - 398
Target Start/End: Complemental strand, 21067208 - 21067147
Alignment:
Q  337 gccttaattgcagcctccaactcctttattgtgttgggtgtgagggggtgggtttagtccca 398  Q
    ||||| ||||||||||||||| |||| |||||||| | | ||||||||||| ||||||||||    
T  21067208 gccttcattgcagcctccaacaccttcattgtgtttgctttgagggggtggatttagtccca 21067147  T

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Target: chr6; HSP #12
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 337 - 398
Target Start/End: Complemental strand, 21088999 - 21088938
Alignment:
Q  337 gccttaattgcagcctccaactcctttattgtgttgggtgtgagggggtgggtttagtccca 398  Q
    ||||| ||||||||||||||| |||| |||||||| | | ||||||||||| ||||||||||    
T  21088999 gccttcattgcagcctccaacaccttcattgtgtttgctttgagggggtggatttagtccca 21088938  T

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Target: chr6; HSP #13
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 329 - 398
Target Start/End: Original strand, 32215853 - 32215922
Alignment:
Q  329 tttgggttgccttaattgcagcctccaactcctttattgtgttgggtgtgagggggtgggtttagtccca 398  Q
    ||||| ||||||| ||||||||||||||| |||| ||| |||||| | |||| |||||| ||||||||||    
T  32215853 tttggtttgccttcattgcagcctccaacaccttcattatgttggttttgagagggtggatttagtccca 32215922  T

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Target: chr6; HSP #14
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 344 - 400
Target Start/End: Complemental strand, 10733582 - 10733526
Alignment:
Q  344 ttgcagcctccaactcctttattgtgttgggtgtgagggggtgggtttagtcccaca 400  Q
    ||||||||||||||  ||| |||||||||| | ||||||||||| ||||||||||||    
T  10733582 ttgcagcctccaacatcttcattgtgttggctttgagggggtggatttagtcccaca 10733526  T

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Target: chr6; HSP #15
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 337 - 400
Target Start/End: Complemental strand, 1744993 - 1744930
Alignment:
Q  337 gccttaattgcagcctccaactcctttattgtgttgggtgtgagggggtgggtttagtcccaca 400  Q
    ||||| ||||||||||||||| |||| |||||||| | | |||||||||||  |||||||||||    
T  1744993 gccttcattgcagcctccaacaccttcattgtgtttgctttgagggggtggagttagtcccaca 1744930  T

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Target: chr6; HSP #16
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 329 - 400
Target Start/End: Complemental strand, 12134642 - 12134571
Alignment:
Q  329 tttgggttgccttaattgcagcctccaactcctttattgtgttgggtgtgagggggtgggtttagtcccaca 400  Q
    ||||| ||||||| ||||||||||||||  |||| |||||||||| | ||| |||||||  |||||||||||    
T  12134642 tttggtttgccttcattgcagcctccaataccttcattgtgttggctttgacggggtggacttagtcccaca 12134571  T

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Target: chr6; HSP #17
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 337 - 400
Target Start/End: Complemental strand, 19753755 - 19753692
Alignment:
Q  337 gccttaattgcagcctccaactcctttattgtgttgggtgtgagggggtgggtttagtcccaca 400  Q
    ||||| |||||||||| |||| |||| |||||||| | | ||||||||||| ||||||||||||    
T  19753755 gcctttattgcagcctgcaacaccttcattgtgttagctttgagggggtggatttagtcccaca 19753692  T

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Target: chr6; HSP #18
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 334 - 396
Target Start/End: Complemental strand, 32027 - 31965
Alignment:
Q  334 gttgccttaattgcagcctccaactcctttattgtgttgggtgtgagggggtgggtttagtcc 396  Q
    |||||||| ||||||| ||||||| |||| ||| |||||| | ||||||||||| ||||||||    
T  32027 gttgccttcattgcagtctccaacaccttcattttgttggctttgagggggtggatttagtcc 31965  T

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