View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2680_low_10 (Length: 252)
Name: NF2680_low_10
Description: NF2680
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2680_low_10 |
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Alignment Details
Target: chr8 (Bit Score: 153; Significance: 3e-81; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 20 - 208
Target Start/End: Original strand, 11574419 - 11574606
Alignment:
| Q |
20 |
aaatacatgcttagactcaacatttacgagatataaaactaattctagaagtacataattgattttgatatgcttttagtataaattaggtattcattgt |
119 |
Q |
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| T |
11574419 |
aaatacatgcttagactcaacatttacgagatatgaaactaattctaaaaatacataattgattttgatatg-ttttagtataaattaggtattcattgt |
11574517 |
T |
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| Q |
120 |
gtacaattacaaacactaattcttcgaactcatgcttagatttgaatccaatacgtttgtttaaacttaaacatttgactggggctttt |
208 |
Q |
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| T |
11574518 |
gtacaattacaaacactaattcttcgaactcatgcctagatttgaatccaatatgtttgcttaaacttaaacatttgaccggggctttt |
11574606 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 97; E-Value: 9e-48
Query Start/End: Original strand, 20 - 208
Target Start/End: Original strand, 11572637 - 11572824
Alignment:
| Q |
20 |
aaatacatgcttagactcaacatttacgagatataaaactaattctagaagtacataattgattttgatatgcttttagtataaattaggtattcattgt |
119 |
Q |
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|||| |||||||||||||||| ||||| |||||| ||||||||||||||| ||||||| ||||||||||||||||||| ||||||||||||||| ||||| |
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| T |
11572637 |
aaatgcatgcttagactcaacgtttaccagatatgaaactaattctagaaatacataagtgattttgatatgcttttaatataaattaggtatttattgt |
11572736 |
T |
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| Q |
120 |
gtacaattacaaacactaattcttcgaactcatgcttagatttgaatccaatacgtttgtttaaacttaaacatttgactggggctttt |
208 |
Q |
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| T |
11572737 |
gtacaa-tgcaaacactaattctttcaactgatacctagatttgaatccaatacatttgcttaaacctaaatattcgagtggggttttt |
11572824 |
T |
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