View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2680_low_2 (Length: 641)
Name: NF2680_low_2
Description: NF2680
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2680_low_2 |
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Alignment Details
Target: chr1 (Bit Score: 587; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 587; E-Value: 0
Query Start/End: Original strand, 9 - 623
Target Start/End: Original strand, 18011215 - 18011829
Alignment:
| Q |
9 |
caagaaaatccttgaaaagaagtggcgaagcatcggttgtaagtatcgttgcattcatcaatttttcttcttgcaaaccttcacctaaggatagatgttt |
108 |
Q |
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| T |
18011215 |
caagaaaatccttgaaaagaagtggcgaagcatcggttgtaagtatcgttgcattcatcaatttttcttcttgcaaaccatcacctaaggatagatgctt |
18011314 |
T |
|
| Q |
109 |
atgacgatgaatattgtcatgttgttccaaagcatcactagaaaacattgcaccacattcaacacatttatcattgttgtcggtgttcggttttttgctc |
208 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
18011315 |
atgatgatgaatattgtcatgttgttccaaagcatcactagaaaacattgcaccacattcaacacatttgtcattgttgtcggtgttcggttttttgctc |
18011414 |
T |
|
| Q |
209 |
cctgaaaaaactggtgacaaaacttccaatgttcctgctgcaagatggttttgaaaagtttctagaactggttctggattctcaccagttaacaacattt |
308 |
Q |
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| T |
18011415 |
cctgaaaaaactggtgacaaaacttccaatgttcctgcagcaagatggttttgaaaagtttctagaactggttctggattctcaccagttaacaacattt |
18011514 |
T |
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| Q |
309 |
cactaagtggatcaacttccaagtgatgaactgaatcgacgcgagttagctgcgattttccaggacaggttgagcttctcttatgtctgcccatcttttt |
408 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18011515 |
cactaagtggatcaacttccaagtgatgaactgaatcgacgcgagttagctgcgattttccaggacaggttgagcttctcttatgtctgcccatcttttt |
18011614 |
T |
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| Q |
409 |
gtatgtatcttcattaagaagtgactttaatcttgattttatagaatgtcttgcatgtggagtggagtgtaccagcttattttcttcaacctggaaatct |
508 |
Q |
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| T |
18011615 |
gtatgtatcttcattaagaagtgactttaatcttgattttatagaatgtcttgcatgtggagtggagtgtaccagcttattttcttcaacctggaaatct |
18011714 |
T |
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| Q |
509 |
ttatattagatatcactttcactaagttcctttatgagcctacattaatcagatatttcttaattgggctttgcttgaataaataacttaattaagcact |
608 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
18011715 |
ttatattagatatcactttcactaagttcctttatgagcctacattaatcagatatttcttaattgggctctgcttgaataaataacttaattaagcact |
18011814 |
T |
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| Q |
609 |
gataatataagcatt |
623 |
Q |
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|||||||||||||| |
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| T |
18011815 |
tataatataagcatt |
18011829 |
T |
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