View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2680_low_8 (Length: 320)
Name: NF2680_low_8
Description: NF2680
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2680_low_8 |
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Alignment Details
Target: chr1 (Bit Score: 259; Significance: 1e-144; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 1 - 308
Target Start/End: Original strand, 3972619 - 3972925
Alignment:
| Q |
1 |
cttgacttgatcaagatcattaaatagctattggatggtgaagatttacactggaccacatctagtgaacaaataactggagaggatctttgtccggatc |
100 |
Q |
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| T |
3972619 |
cttgacttgatcaagatcattaaatagctattggatggtgaagatttacactggaccacatctagtgaacaaatcactggagaggatccttgtccggatc |
3972718 |
T |
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| Q |
101 |
ttacactttgaaaatgaatctcgtataaaatgatcaaacacgcattgattgtatttaataaaaaagaaagtatttaagagaatgtcgaaggaagnnnnnn |
200 |
Q |
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| T |
3972719 |
ttacactttgaaaatgagtctcgtataaaatgatcaaacacgcattgattgtatttaataaaaaagaaagtatttaagagaatgtcgaaggaag-aaaaa |
3972817 |
T |
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| Q |
201 |
nngcattcatatcattcttccttcacctataatatattgagtgcatctctttaaataaatgtttatttgtagatttcacttagatgtcattggttttttg |
300 |
Q |
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| T |
3972818 |
aagtattcatatcattcttccttcacctataatatattgagtgcatctctttaaataaatgtttatttgtagattttacttagatgtcattggttttttg |
3972917 |
T |
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| Q |
301 |
tgcctttg |
308 |
Q |
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| T |
3972918 |
tgcctttg |
3972925 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 1 - 71
Target Start/End: Complemental strand, 52046263 - 52046193
Alignment:
| Q |
1 |
cttgacttgatcaagatcattaaatagctattggatggtgaagatttacactggaccacatctagtgaaca |
71 |
Q |
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| T |
52046263 |
cttgacttggtcaagatcattaaataactattgaatgataaagatttacaccgcaccacatccagtgaaca |
52046193 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 2 - 69
Target Start/End: Original strand, 23322492 - 23322559
Alignment:
| Q |
2 |
ttgacttgatcaagatcattaaatagctattggatggtgaagatttacactggaccacatctagtgaa |
69 |
Q |
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|||||||| |||| || |||||| ||| ||||||||||||||||||||||| ||| |||| |||||| |
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| T |
23322492 |
ttgacttggtcaaaataattaaagagccattggatggtgaagatttacactagactgcatccagtgaa |
23322559 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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