View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2680_low_9 (Length: 275)
Name: NF2680_low_9
Description: NF2680
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2680_low_9 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 185; Significance: 1e-100; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 25 - 275
Target Start/End: Original strand, 3972343 - 3972594
Alignment:
| Q |
25 |
gatagacataatacaactcttcaagaaatctgtcatttgatcctttaccattctttaaaagaactcacgtcacctcctgcgtacaaagagggcattacga |
124 |
Q |
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| T |
3972343 |
gatagacataatacaactcttcaagaaatcagtcatttgatcctttaccattctttgaaagaactcacgtcaactcctgcgtacaaagagggcattacga |
3972442 |
T |
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| Q |
125 |
agagtttaagcaactgtaactnnnnnnnnn-gtgattaaatttgtgtgtattcgtatgccaaaaacactctttcgtttattctcatatctgaagaaacca |
223 |
Q |
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|||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| || |
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| T |
3972443 |
agagtttaagcacctgtaaccaaaaaaaaaagtgattaaatttgtgtgtattcgtatgccaaaaacactctttcgtttattctcatatcagaagaaatca |
3972542 |
T |
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| Q |
224 |
atatggatcttacgggagcatattgtctccgctgaccggagagttcagtgga |
275 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
3972543 |
atatggatcttacgggagcatattgtctccggtgaccggagagttcagtgga |
3972594 |
T |
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